Makefile 18.8 KB
Newer Older
lvs's avatar
lvs committed
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
COMMON_REPO := ../common_xilinx/

#Common Includes
include $(COMMON_REPO)/utility/boards.mk
include $(COMMON_REPO)/libs/xcl2/xcl2.mk
include $(COMMON_REPO)/libs/opencl/opencl.mk






# Host Application

#helloworld_SRCS=./src/host.cpp $(oclHelper_SRCS) $(xcl2_SRCS)
#helloworld_HDRS=$(xcl2_HDRS)

lvs's avatar
lvs committed
18
19
20
21
22
23
24
25
#helloworld_SRCS=$(wildcard ../common/src/AOCLUtils/*.cpp wrapcl/src/*.cpp host/src/*.cpp) \
#		$(oclHelper_SRCS) \
#		$(xcl2_SRCS)

#helloworld_HDRS=$(wildcard ./host/inc/*.h) \
#		$(xcl2_HDRS)

hostbin_SRCS=$(wildcard ../common/src/AOCLUtils/*.cpp wrapcl/src/*.cpp host/src/*.cpp) \
lvs's avatar
lvs committed
26
27
28
		$(oclHelper_SRCS) \
		$(xcl2_SRCS)

lvs's avatar
lvs committed
29
hostbin_HDRS=$(wildcard ./host/inc/*.h) \
lvs's avatar
lvs committed
30
31
32
33
34
		$(xcl2_HDRS)

# -U__STRICT_ANSI__: to avoid: ‘cl_float3 {aka union cl_float4}’ has no member named ‘y’


lvs's avatar
lvs committed
35
36
37
38
39
40
41
42
43
44
45
46
#helloworld_CXXFLAGS=-I../common/inc/ \
#		    -I./host/inc/ \
#		    -I. \
#		    -I./wrapcl/inc/ \
#		    $(opencl_CXXFLAGS) $(xcl2_CXXFLAGS) $(oclHelper_CXXFLAGS) \
#		    -std=c++0x \
#		    -U__STRICT_ANSI__ \
#		    $(ENABLE_KERNELS) \
#		    $(REP) \
#		    $(FIPO_FLAG)

hostbin_CXXFLAGS=-I../common/inc/ \
lvs's avatar
lvs committed
47
48
49
50
51
52
53
54
55
56
		    -I./host/inc/ \
		    -I. \
		    -I./wrapcl/inc/ \
		    $(opencl_CXXFLAGS) $(xcl2_CXXFLAGS) $(oclHelper_CXXFLAGS) \
		    -std=c++0x \
		    -U__STRICT_ANSI__ \
		    $(ENABLE_KERNELS) \
		    $(REP) \
		    $(FIPO_FLAG)
		    
lvs's avatar
lvs committed
57
#helloworld_LDFLAGS=$(opencl_LDFLAGS)
Leonardo Solis's avatar
Leonardo Solis committed
58
59
#hostbin_LDFLAGS=$(opencl_LDFLAGS)
hostbin_LDFLAGS=$(opencl_LDFLAGS) -lrt
lvs's avatar
lvs committed
60

lvs's avatar
lvs committed
61
62
#EXES=helloworld
EXES=hostbin
lvs's avatar
lvs committed
63
64
65

# Kernel
#vector_addition_SRCS=./src/vector_addition.cl
lvs's avatar
lvs committed
66
67
#vector_addition_SRCS=./device/Krnl_GA.cl
Krnl_GA_SRCS=./device/Krnl_GA.cl
lvs's avatar
lvs committed
68

69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
#-------------------------------
# AWS only: apply the following 
# kernel compile & link configuration options

# Otherwise error during VPL
# "dr.bd.tcl" seems to be using a configuration for VCU1525
# instead for AWS VU9P

# Problem reported here:
# https://forums.xilinx.com/t5/SDAccel/Building-ERROR-VPL-17-55-set-property-expects-at-least-one/td-p/893221

# AWS reference guide
# https://github.com/aws/aws-fpga/blob/master/SDAccel/docs/On_Premises_Development_Steps.md
# aws-fpga/SDAccel/examples/aws/kernel_3ddr_bandwidth/Makefile

# https://www.xilinx.com/support/documentation/sw_manuals/xilinx2017_2/ug1023-sdaccel-user-guide.pdf
# Page 33 (could not find in the v2017.4)
# --max_memory_ports [all | <kernel_name>]
# Optional
# Sets the maximum memory port property 
# for all kernels or a given kernel

91
92
## Commented because it is example
## Choosing the "bandwidth" kernel for maximum memory port property 
93
94
# krnl_GA_CLFLAGS=--max_memory_ports bandwidth

95
96
97
98
## Commented because not all kernels in design need that
## Choosing the all kernels in design for maximum memory port property 
# Krnl_GA_CLFLAGS=--max_memory_ports all

99
100
101
102
103
104
105
## Ideal configuration, but results in routing error
#Krnl_GA_CLFLAGS=--max_memory_ports Krnl_GA \
#		--max_memory_ports Krnl_Conform \
#		--max_memory_ports Krnl_InterE \
#		--max_memory_ports Krnl_IntraE

#Krnl_GA_CLFLAGS=--max_memory_ports Krnl_GA
106
107
108
109
110
111
112
113

# https://www.xilinx.com/support/documentation/sw_manuals/xilinx2017_4/ug1023-sdaccel-user-guide.pdf
# Page 44
# --sp <kernel_inst_name>.<interface_name>:<bank>
# Valid DDR4 bank names are 
# bank0, bank1, bank2, and bank3 
# for platforms with 4 DDR banks.

114
## Commented because it is example
115
116
117
118
#krnl_GA_LDCLFLAGS+= --sp bandwidth_1.m_axi_gmem0:bank0 \
#		    --sp bandwidth_1.m_axi_gmem1:bank1 \
#		    --sp bandwidth_1.m_axi_gmem2:bank2	

119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
## Ideal configuration, but results in routing error
# First two args of IntraE are the 2nd and 3rd of InterE (atom_charges & atom_types),
# Therefore they are mapped to the same DDR bank
#Krnl_GA_LDCLFLAGS+=--sp Krnl_GA_1.m_axi_gmem0:bank0 \
#		   --sp Krnl_GA_1.m_axi_gmem1:bank0 \
#		   --sp Krnl_GA_1.m_axi_gmem2:bank0 \
#		   --sp Krnl_GA_1.m_axi_gmem3:bank0 \
#		   --sp Krnl_Conform_1.m_axi_gmem0:bank1 \
#		   --sp Krnl_Conform_1.m_axi_gmem1:bank1 \
#		   --sp Krnl_Conform_1.m_axi_gmem2:bank1 \
#		   --sp Krnl_Conform_1.m_axi_gmem3:bank1 \
#		   --sp Krnl_Conform_1.m_axi_gmem4:bank1 \
#		   --sp Krnl_InterE_1.m_axi_gmem0:bank2 \
#		   --sp Krnl_InterE_1.m_axi_gmem1:bank2 \
#		   --sp Krnl_InterE_1.m_axi_gmem2:bank2 \
#		   --sp Krnl_IntraE_1.m_axi_gmem0:bank2	\
#		   --sp Krnl_IntraE_1.m_axi_gmem1:bank2	\
#		   --sp Krnl_IntraE_1.m_axi_gmem2:bank3	\
#		   --sp Krnl_IntraE_1.m_axi_gmem3:bank3	\
#		   --sp Krnl_IntraE_1.m_axi_gmem4:bank3	\
#		   --sp Krnl_IntraE_1.m_axi_gmem5:bank3	\
#		   --sp Krnl_IntraE_1.m_axi_gmem6:bank3	\
#		   --sp Krnl_IntraE_1.m_axi_gmem7:bank3	\
# 		   --sp Krnl_IntraE_1.m_axi_gmem8:bank3	\
#		   --sp Krnl_IntraE_1.m_axi_gmem9:bank3	\
#		   --sp Krnl_IntraE_1.m_axi_gmem10:bank3

Krnl_GA_LDCLFLAGS+=--sp Krnl_GA_1.m_axi_gmem:bank0      \
		   --sp Krnl_Conform_1.m_axi_gmem:bank1 \
		   --sp Krnl_InterE_1.m_axi_gmem:bank2  \
		   --sp Krnl_IntraE_1.m_axi_gmem:bank3
150
151
152
153
154
155
156
157
158
159
160
##
# https://www.xilinx.com/support/documentation/sw_manuals/xilinx2017_4/ug1281-sdaccel-debugging-guide.pdf
# Page 32
# Instrumentation 1: Kernel Hangs due to AXI Violations
##

# Add Lightweight AXI Protocol Checker (lapc)
# <protocol:< compute_unit_name >:< interface_name >>
LAPC:=none

ifneq ($(LAPC),none)
161
162
163

## Commented because error was obtained:
## Number of axi protocol checkers requested must be between 1 and 63.
164
165
#Krnl_GA_LDCLFLAGS+=--dk protocol:all:all

166
167
168
## Warning obtained (not sure if because of configuration)
## # xbsak status --lapc
## Invalid codes read, skip decoding
169
Krnl_GA_LDCLFLAGS+=--dk protocol:Krnl_GA_1:m_axi_gmem0 \
170
171
172
173
		   --dk protocol:Krnl_GA_1:m_axi_gmem1 \
		   --dk protocol:Krnl_GA_1:m_axi_gmem2 \
		   --dk protocol:Krnl_GA_1:m_axi_gmem3 \
		   --dk protocol:Krnl_Conform_1:m_axi_gmem0 \
174
		   --dk protocol:Krnl_Conform_1:m_axi_gmem1 \
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
		   --dk protocol:Krnl_Conform_1:m_axi_gmem2 \
		   --dk protocol:Krnl_Conform_1:m_axi_gmem3 \
		   --dk protocol:Krnl_Conform_1:m_axi_gmem4 \
                   --dk protocol:Krnl_InterE_1:m_axi_gmem0 \
	 	   --dk protocol:Krnl_InterE_1:m_axi_gmem1 \
		   --dk protocol:Krnl_InterE_1:m_axi_gmem2 \
	           --dk protocol:Krnl_IntraE_1:m_axi_gmem0 \
		   --dk protocol:Krnl_IntraE_1:m_axi_gmem1 \
		   --dk protocol:Krnl_IntraE_1:m_axi_gmem2 \
	           --dk protocol:Krnl_IntraE_1:m_axi_gmem3 \
		   --dk protocol:Krnl_IntraE_1:m_axi_gmem4 \
		   --dk protocol:Krnl_IntraE_1:m_axi_gmem5 \
	           --dk protocol:Krnl_IntraE_1:m_axi_gmem6 \
		   --dk protocol:Krnl_IntraE_1:m_axi_gmem7 \
		   --dk protocol:Krnl_IntraE_1:m_axi_gmem8 \
	           --dk protocol:Krnl_IntraE_1:m_axi_gmem9 \
		   --dk protocol:Krnl_IntraE_1:m_axi_gmem10
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209

## Commented because error was obtained:
## No interface pins matched 'get_bd_intf_pins -of /Krnl_Conform_1 -filter NAME=~m_axi_gmem'
## ERROR: caught error: Unable to find interface pin  for AXI protocol checker insertion
#Krnl_GA_LDCLFLAGS+=--dk protocol:Krnl_GA_1:m_axi_gmem \
#		   --dk protocol:Krnl_Conform_1:m_axi_gmem \
#                  --dk protocol:Krnl_InterE_1:m_axi_gmem \
#	           --dk protocol:Krnl_IntraE_1:m_axi_gmem
endif

## Adding Performance Monitors (spm) 
## enables the listing of detailed communication statistics (counters). 
## --profile_kernel data:<kernel_name|all>:<cu_name|all>:<interface_name|all>
SPM:=none

ifneq ($(SPM),none)
##--profile_kernel data:krnl1:cu1:m_axi_gmem0
##--profile_kernel data:krnl2:cu2:m_axi_gmem
210
211
212
213
Krnl_GA_LDCLFLAGS+=--profile_kernel data:Krnl_GA:Krnl_GA_1:all \
		   --profile_kernel data:Krnl_Conform:Krnl_Conform_1:all \
		   --profile_kernel data:Krnl_InterE:Krnl_InterE_1:all \
		   --profile_kernel data:Krnl_IntraE:Krnl_IntraE_1:all
214
215
endif

216
217
218
219
#-------------------------------



lvs's avatar
lvs committed
220
221
#XOS=vector_addition
XOS=Krnl_GA
lvs's avatar
lvs committed
222

lvs's avatar
lvs committed
223
224
#vector_addition_XOS=vector_addition
Krnl_GA_XOS=Krnl_GA
lvs's avatar
lvs committed
225

lvs's avatar
lvs committed
226
227
#XCLBINS=vector_addition
XCLBINS=Krnl_GA
lvs's avatar
lvs committed
228
229

# check
lvs's avatar
lvs committed
230
231
232
233
#check_EXE=helloworld
check_EXE=hostbin
#check_XCLBINS=vector_addition
check_XCLBINS=Krnl_GA
lvs's avatar
lvs committed
234
235
236
237

CHECKS=check

include $(COMMON_REPO)/utility/rules.mk
lvs's avatar
lvs committed
238

239
240
241
242
243
244
245
# Note that the definition of "newline" contains two blank lines.
# Using $(newline) will expand into only one newline.
define newline


endef

246
247
248
249
250
# Docking parameters 
# that directly determine the execution time
# Following values are used only for emulation
# to have a short but still a representative test
PDB  := 1stp
251
PSIZE:= 150
Leonardo Solis's avatar
Leonardo Solis committed
252
253
254
NRUN := 10
NEV  := 800000
NGEN := 27000
255
GFPOP:= 0
256

257
258
259
# Switching to the other SDAccel 2017.4 default platform
# As it is available in Xelera "saruman" server
#DEVICES:= xilinx:kcu1500:dynamic (in ../common_xilinx/utility/boards.mk)
Leonardo Solis's avatar
Leonardo Solis committed
260

261
262
# Boards in SDAccel installation path: /opt/cad/xilinx/SDx/2017.4/platforms/

Leonardo Solis's avatar
Leonardo Solis committed
263
264
# If several versions are present, e.g.: "vcu1525_5_0" and "vcu1525_5_1"
# Pay attention to which should be used
265
#BOARD:= xilinx:kcu1500:dynamic
Leonardo Solis's avatar
Leonardo Solis committed
266
267
268
#BOARD:= xilinx:vcu1525:dynamic

# Boards in external paths
269
270
271
272
273
274
275
276
277
278
279

# Cloned from https://github.com/aws/aws-fpga
# This corresponds to AWS Shell v04261818 
# https://github.com/aws/aws-fpga/blob/master/hdk/docs/AWS_Shell_RELEASE_NOTES.md
# IMPORTANT: source scripts to get the full DSA
# Because by default only the "sw" component is provided in GitHub
#BOARD:= /home/wimi/lvs/ocl_xilinx/aws-fpga/SDAccel/aws_platform/xilinx_aws-vu9p-f1-04261818_dynamic_5_0/xilinx_aws-vu9p-f1-04261818_dynamic_5_0.xpfm
BOARD:= /home/wimi/lvs/DSA_SDACCEL_AWS_VU9P/xilinx_aws-vu9p-f1-04261818_dynamic_5_0/xilinx_aws-vu9p-f1-04261818_dynamic_5_0.xpfm

# Copied from Xelera (saruman) SDAccel installation path
#BOARD:= /home/wimi/lvs/DSA_SDACCEL_AWS_VU9P/xilinx_aws-vu9p-f1_dynamic_5_0/xilinx_aws-vu9p-f1_dynamic_5_0.xpfm
280
#BOARD:= /home/wimi/lvs/DSA_SDACCEL_VCU1525_5_1/xilinx_vcu1525_dynamic_5_1/xilinx_vcu1525_dynamic_5_1.xpfm
281
#BOARD:= /opt/cad/xilinx/SDx/2017.1/platforms/xilinx_adm-pcie-7v3_1ddr_3_0/xilinx_adm-pcie-7v3_1ddr_3_0.xpfm
Leonardo Solis's avatar
Leonardo Solis committed
282

283
284
NDEVICES_EMU:=1

285

286
287
288
289
# Compile and generate report
kerrpt-sw:
	make clean
	@echo $(newline)
290
	make all REPORT=estimate TARGETS=sw_emu DEVICES=$(BOARD)
291
292
293
294
295
	@echo $(newline)
	cp ./xclbin/$(XCLBINS).sw_emu.*.xclbin .
	@echo $(newline)
	mv ./$(XCLBINS).sw_emu.*.xclbin ./$(XCLBINS).xclbin
	@echo $(newline)
296
297
298
	@echo "==============================================================================="
	@echo "INFO: sw emulation file created under: \"./xclbin/$(XCLBINS).sw_emu.*.xclbin\" "
	@echo "INFO: ... was copied and renamed as \"./$(XCLBINS).xclbin\"                    "
299
	@echo $(newline)
300
301
	@echo "INFO: a \"./system_estimate.xtxt\" report was generated!                       "
	@echo "==============================================================================="
302
303
	@echo $(newline)

304

305
# Compile for sw and hw emulation
306
kerswemu:
307
	make all TARGETS=sw_emu DEVICES=$(BOARD)
308
309
	cp ./xclbin/$(XCLBINS).sw_emu.*.xclbin .
	mv ./$(XCLBINS).sw_emu.*.xclbin ./$(XCLBINS).xclbin
310
	@echo $(newline)
311
312
313
314
	@echo "==============================================================================="
	@echo "INFO: sw emulation file created under: \"./xclbin/$(XCLBINS).sw_emu.*.xclbin\" "
	@echo "INFO: ... was copied and renamed as \"./$(XCLBINS).xclbin\"    	              "
	@echo "==============================================================================="
315
	@echo $(newline)
316

317

318
kerhwemu:
319
	make all TARGETS=hw_emu	DEVICES=$(BOARD)
320
321
322
	cp ./xclbin/$(XCLBINS).hw_emu.*.xclbin .
	mv ./$(XCLBINS).hw_emu.*.xclbin ./$(XCLBINS).xclbin
	@echo $(newline)
323
324
325
326
	@echo "==============================================================================="
	@echo "INFO: hw emulation file created under: \"./xclbin/$(XCLBINS).hw_emu.*.xclbin\" "
	@echo "INFO: ... was copied and renamed as \"./$(XCLBINS).xclbin\"                    "
	@echo "==============================================================================="
327
	@echo $(newline)
328

329

330
331
332
# Run emulation
# Compilation (host & device) if not done previously
# The .dlg file is written in ./
lvs's avatar
lvs committed
333
# "exe" and "xclbin" are rules from "rules.mk"
334
335
# SDAccel 2017.4: User Guide UG1023, "Running Software and Hardware Emulation in XOCC Flow"
#emconfigutil --platform xilinx_vcu1525_dynamic_5_0 --nd 1
336
swemu: kerswemu
337
	emconfigutil --platform $(BOARD) --nd $(NDEVICES_EMU)
338
339
340
341
	XCL_EMULATION_MODE=sw_emu ./$(EXES) \
	-ffile input/$(PDB)/derived/$(PDB)_protein.maps.fld \
	-lfile input/$(PDB)/derived/$(PDB)_ligand.pdbqt \
	-psize $(PSIZE) -nrun $(NRUN) -nev $(NEV) -ngen $(NGEN) -gfpop 1
342
	@echo $(newline)
Leonardo Solis's avatar
Leonardo Solis committed
343
344
	@echo "===================================================================================="
	@echo "INFO: swemu log file is under: \"./docking.dlg\"                                    "
345
	@echo $(newline)
Leonardo Solis's avatar
Leonardo Solis committed
346
347
	@echo "INFO: profile and timeline trace report files are formatted for SDx GUI             "
	@echo "INFO: ... if reports not generated, verify that \"sdaccel.ini\" exists!             "
348
349
350
351
	@echo $(newline)
	sdx_analyze profile sdaccel_profile_summary.csv
	@echo $(newline)
	sdx_analyze trace sdaccel_timeline_trace.csv
Leonardo Solis's avatar
Leonardo Solis committed
352
353
354
	@echo $(newline)
	@echo "INFO: (1) open sdx, (2) select \"File->Open File\", (3) browse to *.xprf or *.wdb  "
	@echo "===================================================================================="
355
356
	@echo $(newline)

357
358
359
360
361
362
363
364
365
366
367
368
369
370
# Debug on software using Xilinx GDB
# Analyze hangs with the following gdb extensions:
# xprint queue [<cl_command_queue>]
# xprint event <cl_event>
# xprint mem [<cl_mem>]
# xprint kernel
# xprint all
swemudebug:
	xgdb --args \
	./$(EXES) \
	-ffile input/$(PDB)/derived/$(PDB)_protein.maps.fld \
	-lfile input/$(PDB)/derived/$(PDB)_ligand.pdbqt \
	-psize $(PSIZE) -nrun $(NRUN) -nev $(NEV) -ngen $(NGEN) -gfpop 1

371

372
hwemu: kerhwemu
373
	emconfigutil --platform $(BOARD) --nd $(NDEVICES_EMU)
374
375
376
377
	XCL_EMULATION_MODE=hw_emu ./$(EXES) \
	-ffile input/$(PDB)/derived/$(PDB)_protein.maps.fld \
	-lfile input/$(PDB)/derived/$(PDB)_ligand.pdbqt \
	-psize $(PSIZE) -nrun $(NRUN) -nev $(NEV) -ngen $(NGEN) -gfpop 1
378
	@echo $(newline)
379
380
	@echo "==========================================================================="
	@echo "INFO: hwemu log file is under: \"./docking.dlg\"                           "
381
	@echo $(newline)
382
383
	@echo "INFO: profile and timeline trace report files are formatted for SDx GUI    "
	@echo "INFO: ... if reports not generated, verify that \"sdaccel.ini\" exists!    "
384
385
386
387
	@echo $(newline)
	sdx_analyze profile sdaccel_profile_summary.csv
	@echo $(newline)
	sdx_analyze trace sdaccel_timeline_trace.csv
388
	@echo "==========================================================================="
389
	@echo $(newline)
390

391

392
393
394
# Build hw (FPGA bitstream)
# NOT integrated yet in a multistep compilation
hw: 	
395
	make all TARGETS=hw DEVICES=$(BOARD)
396
	@echo $(newline)
397
398
399
	@echo "========================================================================="
	@echo "INFO: FPGA bitstream is under: \"./xclbin/$(XCLBINS).hw.*.xclbin\"       " 
	@echo "========================================================================="
400
	@echo $(newline)
401

402

403
404
405
# Build instrumented hw (FPGA bitstream)
# NOT integrated yet in a multistep compilation
hw-instr: 	
406
	make all TARGETS=hw DEVICES=$(BOARD) LAPC=yes SPM=yes
407
408
409
410
411
412
413
414
	@echo $(newline)
	@echo "=============================================================================================="
	@echo "INFO: [instrumented] FPGA bitstream is under: \"./xclbin/$(XCLBINS).hw.*.xclbin\"             " 
	@echo "=============================================================================================="
	@echo $(newline)



415
416
417
418
419
420
# Execute on remote server
# Host-recompilation
# Copy of host to $(TARGET_DIR_HW)
# The working directory is changed
# So .dlg file is written in $(TARGET_DIR_HW)
eva: exe
421
422
423
424
425
	./$(EXES) \
	-ffile input/$(PDB)/derived/$(PDB)_protein.maps.fld \
	-lfile input/$(PDB)/derived/$(PDB)_ligand.pdbqt \
	-resnam docking_$(PDB)_$(NRUN) \
	-nrun $(NRUN) -gfpop $(GFPOP)
426
427
428
429
430
431
432
433
434
435
436
437
438
439
	@echo $(newline)
	@echo "==========================================================================="
	@echo "INFO: evaluation log file is under: \"./docking.dlg\"                      "
	@echo $(newline)
	@echo "INFO: profile and timeline trace report files are formatted for SDx GUI    "
	@echo "INFO: ... if reports not generated, verify that \"sdaccel.ini\" exists!    "
	@echo $(newline)
	sdx_analyze profile sdaccel_profile_summary.csv
	@echo $(newline)
	sdx_analyze trace sdaccel_timeline_trace.csv
	@echo "==========================================================================="
	@echo $(newline)


440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
# Debug on hardware using Xilinx GDB
# Analyze hangs with the following gdb extensions:
# xprint queue [<cl_command_queue>]
# xprint event <cl_event>
# xprint mem [<cl_mem>]
# xprint kernel
# xprint all
evadebug:
	xgdb --args \
	./$(EXES) \
	-ffile input/$(PDB)/derived/$(PDB)_protein.maps.fld \
	-lfile input/$(PDB)/derived/$(PDB)_ligand.pdbqt \
	-resnam docking_debug_$(PDB)_$(NRUN) \
	-nrun $(NRUN) -gfpop $(GFPOP)


456
457
458
459
460
461
462
463
# Project name
PROJECT_NAME := ofdock_taskpar_xl

COPY_DIR := copy_$(PROJECT_NAME)
COPY_DIR_DOCK := $(PROJECT_NAME)

# Make sure this remote-server alias exists (in ~/.ssh/config)

464
465
466
467
468
469
470
## Xelera
#SERVER_BRIDGE := erebor:/scratch/
#SERVER_EXEC   := saruman:~/ocladock_sdx17_4

## AWS
SERVER_BRIDGE := eredmithrim:/home/lvs/ESA/AWS
SERVER_EXEC   := AWS
471
472
473
474
475
476
477
478
479
480
481
482
483
484

# Delete an existing folder if previously created
# Create a folder $(COPY_DIR) in the parent directory
# Copy binaries into $(COPY_DIR) folder, avoiding the (innecesary) compilation intermediate files
# Copy source files into $(COPY_DIR) as host is built in the remote $(SERVER)
# Create a zip file out of the $(COPY_DIR) folder
copy: clean-copy
	mkdir ../$(COPY_DIR)
	mkdir ../$(COPY_DIR)/$(COPY_DIR_DOCK)
	mkdir ../$(COPY_DIR)/$(COPY_DIR_DOCK)/xclbin
	cp ./xclbin/$(XCLBINS).hw.*.xclbin ../$(COPY_DIR)/$(COPY_DIR_DOCK)/xclbin/
	cp ./xclbin/$(XCLBINS).hw.*.xo ../$(COPY_DIR)/$(COPY_DIR_DOCK)/xclbin/
	cp ./xclbin/$(XCLBINS).hw.*.xclbin ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
	mv ../$(COPY_DIR)/$(COPY_DIR_DOCK)/$(XCLBINS).hw.*.xclbin ../$(COPY_DIR)/$(COPY_DIR_DOCK)/$(XCLBINS).xclbin
485
	cp sdaccel.ini ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
486
487
488
489
490
491
	cp Makefile ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
	cp defines.h ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
	cp defines_fixedpt.h ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
	cp defines_fixedpt_64.h ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
	cp -r device/ ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
	cp -r host/ ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
492
	#cp -r input/ ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
493
494
495
496
497
498
499
500
501
502
	cp -r wrapcl/ ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
	cp -r ../common ../$(COPY_DIR)/
	cp -r ../common_xilinx ../$(COPY_DIR)/
	cp ../conf_sdx174_saruman.sh ../$(COPY_DIR)/
	cd ../;	zip -r $(COPY_DIR).zip $(COPY_DIR)
	@echo $(newline)
	@echo "Transfer the \"$(COPY_DIR).zip\" file to $(SERVER_BRIDGE) server: "
	@echo " "
	cd ../ && scp $(COPY_DIR).zip $(SERVER_BRIDGE)
	@echo $(newline)
503
504
	@echo "=================================================================="
	@echo "Files listed were transferred to $(SERVER_BRIDGE)                 "
505
	@echo $(newline)
506
507
508
	@echo "Then, create AFI and transfer files manually                      "
	@echo "from $(SERVER_BRIDGE) to $(SERVER_EXEC)                           "
	@echo "=================================================================="
509
510
511
512
513
514
515
516
517
518
519
520
521
	@echo $(newline)


clean-copy:
	rm -rf ../$(COPY_DIR)
	rm -f ../$(COPY_DIR).zip
	@echo $(newline)
	@echo "=================================================================="
	@echo "Previous \"$(COPY_DIR).zip\" and its folder were deleted          "
	@echo "=================================================================="
	@echo $(newline)