#31, removed unused comments

ofdock_taskpar_xl/host/inc/calcenergy.h

@@ -26,23 +26,12 @@ typedef struct
 	unsigned char	g1;
 	unsigned int	g2;
 	unsigned int 	g3;
-	float  		grid_spacing;
-
+	float  		grid_spacing;
 	unsigned int    rotbondlist_length;
 	float  		coeff_elec;
 	float  		coeff_desolv;
-/*
-	float* 		conformations_current;
-	float* 		energies_current;
-	float* 		conformations_next;
-	float* 		energies_next;
-	int*   		evals_of_new_entities;
-	unsigned int* 	prng_states;
-*/
-	// L30nardoSV added
-	unsigned int num_of_energy_evals;
-	unsigned int num_of_generations;
-
+	unsigned int 	num_of_energy_evals;
+	unsigned int 	num_of_generations;
 	unsigned int    pop_size;
 	unsigned char   num_of_genes;
 	float  		tournament_rate;
@@ -51,9 +40,7 @@ typedef struct
 	float  		abs_max_dmov;
 	float  		abs_max_dang;
 	float  		lsearch_rate;
-
-	float 		smooth;
-
+	float 		smooth;
 	unsigned int 	num_of_lsentities;
 	float  		rho_lower_bound;
 	float  		base_dmov_mul_sqrt3;
@@ -62,15 +49,6 @@ typedef struct
 	unsigned int 	max_num_of_iters;
 	float  		qasp;
 } Dockparameters;
-
-// ----------------------------------------------------------------------
-// L30nardoSV modified
-// The original function does CUDA calls initializing const kernel data.
-// We create a struct to hold those constants and return them <here>
-// (<here> = where prepare_const_fields_for_gpu() was called),
-// so we can send them to kernels from <here>, instead of from calcenergy.cpp
-// as originally.
-// ----------------------------------------------------------------------
 
 #include "xcl2.hpp"
 #define XILINX_MEMALIGN 4096

ofdock_taskpar_xl/host/inc/processgrid.h

@@ -6,7 +6,6 @@
 #include <stdlib.h>
 #include <math.h>
 
-// L30nardoSV
 #include <libgen.h>
 
 // libgen.h contains basename() and dir() from a fullpath name
@@ -31,7 +30,6 @@ using std::vector;
 typedef struct
 //Struct which can contain all the important informations which derives from .gpf and .xyz files.
 {
-	// L30nardoSV
 	char*  grid_file_path;	  // Added to store the full path of the grid file
 	char   receptor_name [64];
 	int    size_xyz [3];

ofdock_taskpar_xl/host/src/miscellaneous.cpp

@@ -293,7 +293,6 @@ void print_binary_string(unsigned long long to_print)
 	}
 }
 
-//L30nardoSV
 // This was disabled for Windows
 int stricmp(const char* str1, const char* str2)
 //The function compares the two input strings and
@@ -330,8 +329,6 @@ int stricmp(const char* str1, const char* str2)
 	return isdifferent;
 }
 
-
-
 unsigned int genseed(unsigned int init)
 //The function generates random numbers with a linear congruential generator,
 //using Visual C++ generator constants.

ofdock_taskpar_xl/host/src/processgrid.cpp

@@ -14,7 +14,6 @@ int get_gridinfo(const char* fldfilename, Gridinfo* mygrid)
 	//char* dir = dirname(ts1);
 	//char* filename = basename(ts1);
 
-	// L30nardoSV
 	char* ts1 = strdup(fldfilename);
 	mygrid->grid_file_path = dirname(ts1);
 	// ----------------------------------------------------
@@ -128,7 +127,6 @@ int get_gridvalues_f(const Gridinfo* mygrid, float* fgrids)
 		strcat(tempstr, "/");
 		strcat(tempstr, mygrid->receptor_name);
 		
-		// L30nardoSV
 		//strcpy(tempstr, mygrid->receptor_name);
 		//-------------------------------------
 		strcat(tempstr, ".");
@@ -160,4 +158,3 @@ int get_gridvalues_f(const Gridinfo* mygrid, float* fgrids)
 
 	return 0;
 }
-

ofdock_taskpar_xl/host/src/processligand.cpp

@@ -382,7 +382,6 @@ int get_bonds(Liganddata* myligand)
     			}
     			else
     			{
-					// L30nardoSV
     					if (stricmp(atom_names[i], myligand->atom_types[atom_typeid1]) == 0)
 					//if (_stricmp(atom_names[i], myligand->atom_types[atom_typeid1]) == 0)
     					atom_nameid1 = i;
@@ -398,7 +397,6 @@ int get_bonds(Liganddata* myligand)
     			}
     			else
     			{
-					// L30nardoSV
     					if (stricmp(atom_names[i], myligand->atom_types[atom_typeid2]) == 0)
 					//if (_stricmp(atom_names[i], myligand->atom_types[atom_typeid2]) == 0)
     					atom_nameid2 = i;
@@ -584,7 +582,6 @@ int get_VWpars(Liganddata* myligand, const double AD4_coeff_vdW, const double AD
 
 		//identifying atom type
 		for (i=0; i<ATYPE_NUM; i++)
-			// L30nardoSV
 			if (stricmp(atom_names [i], myligand->atom_types [atom_typeid1]) == 0)
 			//if (_stricmp(atom_names[i], myligand->atom_types[atom_typeid1]) == 0)
 				VWid_atype1 = i;
@@ -1191,7 +1188,6 @@ void change_conform_f(Liganddata* myligand,
 	refori_angle = cpu_ref_ori_angles[2];
 
 // +++++++++++++++++++++++++++++++++++++++
-// L30nardoSV
 //printf("cpu_ref_ori_angles [0]: %f, cpu_ref_ori_angles [1]: %f, %f\n",cpu_ref_ori_angles [0],cpu_ref_ori_angles [1],PI);
 //printf("refori_unitvec [0]:%f, refori_unitvec [1]:%f, refori_unitvec [2]:%f\n",refori_unitvec [0],refori_unitvec [1],refori_unitvec [2]);
 // +++++++++++++++++++++++++++++++++++++++