Skip to content
GitLab
Commit 2d758e37 authored by Leonardo Solis's avatar Leonardo Solis
Browse files

#28, replaced krnl refs: from k2 to krnl_conform

parent ec2160ca
Hide whitespace changes
Inline Side-by-side
common_xilinx/utility/boards.mk
View file @ 2d758e37
......@@ -20,8 +20,8 @@ CXXFLAGS:=-Wall -O0 -g -std=c++14 $(OTHER_FLAGS)
# =============================
# Enable Kernels
# =============================
ENABLE_KRNL_GA = YES
ENABLE_K2 = YES
ENABLE_KRNL_GA = YES
ENABLE_KRNL_CONFORM = YES
ENABLE_K3 = YES
ENABLE_K4 = YES
......@@ -82,10 +82,10 @@ else
KRNL_GA =
endif
ifeq ($(ENABLE_K2),YES)
K2 =-DENABLE_KERNEL2
ifeq ($(ENABLE_KRNL_CONFORM),YES)
KRNL_CONFORM =-DENABLE_KRNL_CONFORM
else
K2 =
KRNL_CONFORM =
endif
ifeq ($(ENABLE_K3),YES)
......@@ -247,7 +247,9 @@ ifeq ($(REPRO), YES)
else
REP=
endif
ENABLE_KERNELS = $(KRNL_GA) $(K2) $(K3) $(K4) $(K6) $(K7) $(K10) \
ENABLE_KERNELS = $(KRNL_GA) \
$(KRNL_CONFORM) \
$(K3) $(K4) $(K6) $(K7) $(K10) \
$(K12) $(K14) $(K15) $(K20) \
$(K21) $(K27) \
$(K35) $(K36) $(K37) $(K38) $(K39) $(K40) \
......
ofdock_taskpar_xl/host/src/performdocking.cpp
View file @ 2d758e37
......@@ -40,17 +40,17 @@ static cl_context context = NULL;
static cl_command_queue command_queue = NULL;
#endif
// Kernel name, as defined in the CL file
// Kernel name as defined in the CL file
#ifdef ENABLE_KRNL_GA
static cl_command_queue command_queue_ga = NULL;
static cl_kernel kernel_ga = NULL;
static const char *name_krnl_ga = "Krnl_GA";
#endif
#ifdef ENABLE_KERNEL2
static cl_command_queue command_queue2 = NULL;
static cl_kernel kernel2 = NULL;
static const char *name_k2 = "Krnl_Conform";
#ifdef ENABLE_KRNL_CONFORM
static cl_command_queue command_queue_conform = NULL;
static cl_kernel kernel_conform = NULL;
static const char *name_krnl_conform = "Krnl_Conform";
#endif
#ifdef ENABLE_KERNEL3
......@@ -879,37 +879,37 @@ printf("%i %i\n", dockpars.num_of_intraE_contributors, myligand_reference.num_of
#endif
#endif // End of ENABLE_KRNL_GA
#ifdef ENABLE_KERNEL2 // Krnl_Conform
setKernelArg(kernel2,0, sizeof(mem_KerConstStatic_rotlist_const), &mem_KerConstStatic_rotlist_const);
setKernelArg(kernel2,1, sizeof(mem_KerConstStatic_ref_coords_const), &mem_KerConstStatic_ref_coords_const);
setKernelArg(kernel2,2, sizeof(mem_KerConstStatic_rotbonds_moving_vectors_const), &mem_KerConstStatic_rotbonds_moving_vectors_const);
setKernelArg(kernel2,3, sizeof(mem_KerConstStatic_rotbonds_unit_vectors_const), &mem_KerConstStatic_rotbonds_unit_vectors_const);
setKernelArg(kernel2,4, sizeof(unsigned int), &dockpars.rotbondlist_length);
setKernelArg(kernel2,5, sizeof(unsigned char), &dockpars.num_of_atoms);
setKernelArg(kernel2,6, sizeof(unsigned char), &dockpars.num_of_genes);
#ifdef ENABLE_KRNL_CONFORM // Krnl_Conform
setKernelArg(kernel_conform,0, sizeof(mem_KerConstStatic_rotlist_const), &mem_KerConstStatic_rotlist_const);
setKernelArg(kernel_conform,1, sizeof(mem_KerConstStatic_ref_coords_const), &mem_KerConstStatic_ref_coords_const);
setKernelArg(kernel_conform,2, sizeof(mem_KerConstStatic_rotbonds_moving_vectors_const), &mem_KerConstStatic_rotbonds_moving_vectors_const);
setKernelArg(kernel_conform,3, sizeof(mem_KerConstStatic_rotbonds_unit_vectors_const), &mem_KerConstStatic_rotbonds_unit_vectors_const);
setKernelArg(kernel_conform,4, sizeof(unsigned int), &dockpars.rotbondlist_length);
setKernelArg(kernel_conform,5, sizeof(unsigned char), &dockpars.num_of_atoms);
setKernelArg(kernel_conform,6, sizeof(unsigned char), &dockpars.num_of_genes);
/*
setKernelArg(kernel2,7, sizeof(unsigned char), &num_rotbonds);
setKernelArg(kernel2,8, sizeof(mem_KerConstStatic_ref_orientation_quats_const), &mem_KerConstStatic_ref_orientation_quats_const);
setKernelArg(kernel_conform,7, sizeof(unsigned char), &num_rotbonds);
setKernelArg(kernel_conform,8, sizeof(mem_KerConstStatic_ref_orientation_quats_const), &mem_KerConstStatic_ref_orientation_quats_const);
*/
setKernelArg(kernel2,7, sizeof(mem_KerConstStatic_ref_orientation_quats_const), &mem_KerConstStatic_ref_orientation_quats_const);
setKernelArg(kernel_conform,7, sizeof(mem_KerConstStatic_ref_orientation_quats_const), &mem_KerConstStatic_ref_orientation_quats_const);
#if defined(SINGLE_COPY_POP_ENE)
#else
#if defined (FIXED_POINT_CONFORM)
// fixed-point
setKernelArg(kernel2,8, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[0]);
setKernelArg(kernel2,9, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[1]);
setKernelArg(kernel2,10, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[2]);
setKernelArg(kernel2,11, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[3]);
setKernelArg(kernel_conform,8, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[0]);
setKernelArg(kernel_conform,9, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[1]);
setKernelArg(kernel_conform,10, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[2]);
setKernelArg(kernel_conform,11, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[3]);
#else
// floating-point (original)
setKernelArg(kernel2,8, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[0]);
setKernelArg(kernel2,9, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[1]);
setKernelArg(kernel2,10, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[2]);
setKernelArg(kernel2,11, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[3]);
setKernelArg(kernel_conform,8, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[0]);
setKernelArg(kernel_conform,9, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[1]);
setKernelArg(kernel_conform,10, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[2]);
setKernelArg(kernel_conform,11, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[3]);
#endif
#endif
#endif // End of ENABLE_KERNEL2
#endif // End of ENABLE_KRNL_CONFORM
unsigned char gridsizex_minus1 = dockpars.gridsize_x - 1;
......@@ -1367,39 +1367,39 @@ unsigned char Host_cons_limit = (unsigned char) dockpars.cons_limit;
#endif
#endif
#ifdef ENABLE_KERNEL2 // Krnl_Conform
#ifdef ENABLE_KRNL_CONFORM // Krnl_Conform
/*
#if defined(SINGLE_COPY_POP_ENE)
#if defined (FIXED_POINT_CONFORM)
setKernelArg(kernel2,8, sizeof(fixedpt), &KerConstStatic.ref_orientation_quats_const[4*run_cnt]);
setKernelArg(kernel2,9, sizeof(fixedpt), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 1]);
setKernelArg(kernel2,10, sizeof(fixedpt), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 2]);
setKernelArg(kernel2,11, sizeof(fixedpt), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 3]);
setKernelArg(kernel_conform,8, sizeof(fixedpt), &KerConstStatic.ref_orientation_quats_const[4*run_cnt]);
setKernelArg(kernel_conform,9, sizeof(fixedpt), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 1]);
setKernelArg(kernel_conform,10, sizeof(fixedpt), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 2]);
setKernelArg(kernel_conform,11, sizeof(fixedpt), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 3]);
#else
setKernelArg(kernel2,8, sizeof(float), &KerConstStatic.ref_orientation_quats_const[4*run_cnt]);
setKernelArg(kernel2,9, sizeof(float), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 1]);
setKernelArg(kernel2,10, sizeof(float), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 2]);
setKernelArg(kernel2,11, sizeof(float), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 3]);
setKernelArg(kernel_conform,8, sizeof(float), &KerConstStatic.ref_orientation_quats_const[4*run_cnt]);
setKernelArg(kernel_conform,9, sizeof(float), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 1]);
setKernelArg(kernel_conform,10, sizeof(float), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 2]);
setKernelArg(kernel_conform,11, sizeof(float), &KerConstStatic.ref_orientation_quats_const[4*run_cnt + 3]);
#endif
#else
#if defined (FIXED_POINT_CONFORM)
setKernelArg(kernel2,8, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[0]);
setKernelArg(kernel2,9, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[1]);
setKernelArg(kernel2,10, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[2]);
setKernelArg(kernel2,11, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[3]);
setKernelArg(kernel_conform,8, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[0]);
setKernelArg(kernel_conform,9, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[1]);
setKernelArg(kernel_conform,10, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[2]);
setKernelArg(kernel_conform,11, sizeof(fixedpt), &KerConstDynamic.ref_orientation_quats_const[3]);
#else
setKernelArg(kernel2,8, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[0]);
setKernelArg(kernel2,9, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[1]);
setKernelArg(kernel2,10, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[2]);
setKernelArg(kernel2,11, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[3]);
setKernelArg(kernel_conform,8, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[0]);
setKernelArg(kernel_conform,9, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[1]);
setKernelArg(kernel_conform,10, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[2]);
setKernelArg(kernel_conform,11, sizeof(float), &KerConstDynamic.ref_orientation_quats_const[3]);
#endif
#endif
*/
/*
setKernelArg(kernel2,9, sizeof(unsigned short), &run_cnt);
setKernelArg(kernel_conform,9, sizeof(unsigned short), &run_cnt);
*/
setKernelArg(kernel2,8, sizeof(unsigned short), &run_cnt);
#endif // End of ENABLE_KERNEL2
setKernelArg(kernel_conform,8, sizeof(unsigned short), &run_cnt);
#endif // End of ENABLE_KRNL_CONFORM
#ifdef ENABLE_KERNEL6 // Krnl_PRNG_GG_float
setKernelArg(kernel6,0, sizeof(unsigned int), &cpu_prng_seeds[num_of_prng_blocks * run_cnt]);
......@@ -1470,9 +1470,9 @@ unsigned char Host_cons_limit = (unsigned char) dockpars.cons_limit;
runKernelTask(command_queue_ga,kernel_ga,NULL,NULL);
#endif // ENABLE_KRNL_GA
#ifdef ENABLE_KERNEL2
runKernelTask(command_queue2,kernel2,NULL,NULL);
#endif // ENABLE_KERNEL2
#ifdef ENABLE_KRNL_CONFORM
runKernelTask(command_queue_conform,kernel_conform,NULL,NULL);
#endif // ENABLE_KRNL_CONFORM
#ifdef ENABLE_KERNEL3
runKernelTask(command_queue3,kernel3,NULL,NULL);
......@@ -1583,8 +1583,8 @@ unsigned char Host_cons_limit = (unsigned char) dockpars.cons_limit;
clFinish(command_queue_ga);
#endif
#ifdef ENABLE_KERNEL2
clFinish(command_queue2);
#ifdef ENABLE_KRNL_CONFORM
clFinish(command_queue_conform);
#endif
#ifdef ENABLE_KERNEL3
......@@ -1970,16 +1970,16 @@ bool init() {
// original CL file, that was compiled into an XCLBIN file using the SDAccel tool
#ifdef ENABLE_KRNL_GA
command_queue_ga = clCreateCommandQueue(context, device, 0, &status);
checkError(status, "Failed to create command queue1");
checkError(status, "Failed to create command queue ga");
kernel_ga = clCreateKernel(program, name_krnl_ga, &status);
checkError(status, "Failed to create kernel");
checkError(status, "Failed to create kernel ga");
#endif
#ifdef ENABLE_KERNEL2
command_queue2 = clCreateCommandQueue(context, device, 0, &status);
checkError(status, "Failed to create command queue2");
kernel2 = clCreateKernel(program, name_k2, &status);
checkError(status, "Failed to create kernel");
#ifdef ENABLE_KRNL_CONFORM
command_queue_conform = clCreateCommandQueue(context, device, 0, &status);
checkError(status, "Failed to create command queue conform");
kernel_conform = clCreateKernel(program, name_krnl_conform, &status);
checkError(status, "Failed to create kernel conform");
#endif
#ifdef ENABLE_KERNEL3
......@@ -2167,9 +2167,9 @@ void cleanup() {
if(command_queue_ga) {clReleaseCommandQueue(command_queue_ga);}
#endif
#ifdef ENABLE_KERNEL2
if(kernel2) {clReleaseKernel(kernel2);}
if(command_queue2) {clReleaseCommandQueue(command_queue2);}
#ifdef ENABLE_KRNL_CONFORM
if(kernel_conform) {clReleaseKernel(kernel_conform);}
if(command_queue_conform) {clReleaseCommandQueue(command_queue_conform);}
#endif
#ifdef ENABLE_KERNEL3
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment