Skip to content
GitLab
Commit 4ea7a602 authored by Leonardo Solis's avatar Leonardo Solis
Browse files

#31, removing not anymore needed wrapcl folder + their refs 

compiles but same errors as commit c15a9736
parent c15a9736
Hide whitespace changes
Inline Side-by-side
ofdock_taskpar_xl/Makefile
View file @ 4ea7a602
......@@ -125,7 +125,6 @@ hostbin_HDRS=$(wildcard ./host/inc/*.h) \
hostbin_CXXFLAGS=-I../common/inc/ \
-I./host/inc/ \
-I. \
-I./wrapcl/inc/ \
$(opencl_CXXFLAGS) $(xcl2_CXXFLAGS) $(oclHelper_CXXFLAGS) \
-std=c++0x \
-U__STRICT_ANSI__ \
......@@ -576,7 +575,6 @@ copy: clean-copy
cp -r device/ ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
cp -r host/ ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
#cp -r input/ ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
cp -r wrapcl/ ../$(COPY_DIR)/$(COPY_DIR_DOCK)/
cp -r ../common ../$(COPY_DIR)/
cp -r ../common_xilinx ../$(COPY_DIR)/
cp ../conf_sdx174_saruman.sh ../$(COPY_DIR)/
......
ofdock_taskpar_xl/host/inc/performdocking.h
View file @ 4ea7a602
......@@ -14,17 +14,6 @@
#include "processresult.h"
#include <CL/opencl.h>
//#include "commonMacros.h"
//#include "listAttributes.h"
//#include "Platforms.h"
//#include "Devices.h"
//#include "Contexts.h"
//#include "CommandQueues.h"
//#include "Programs.h"
#include "Kernels.h"
//#include "ImportBinary.h"
//#include "ImportSource.h"
#include "BufferObjects.h"
#include "xcl2.hpp"
#include <vector>
......
ofdock_taskpar_xl/host/src/main.cpp
View file @ 4ea7a602
......@@ -28,7 +28,6 @@ int main(int argc, char* argv[])
clock_t clock_start_program, clock_stop_program;
clock_start_program = clock();
// ------------------------
......@@ -80,10 +79,6 @@ int main(int argc, char* argv[])
//------------------------------------------------------------
// Calculating energies of reference ligand if required
//------------------------------------------------------------
#if 0
if (mypars.reflig_en_reqired == 1)
print_ref_lig_energies_f(myligand_init, mygrid, floatgrids, mypars.coeffs.scaled_AD4_coeff_elec, mypars.coeffs.AD4_coeff_desolv, mypars.qasp);
#endif
if (mypars.reflig_en_reqired == 1) {
print_ref_lig_energies_f(myligand_init,
mypars.smooth,
......
ofdock_taskpar_xl/wrapcl/inc/BufferObjects.h deleted 100644 → 0
View file @ c15a9736
#ifndef BUFFER_OBJECTS_H
#define BUFFER_OBJECTS_H
// L30nardoSV
//#include <stdio.h>
//#include <CL/opencl.h>
#include "commonMacros.h"
/*
Memory objects are represented by cl_mem objects.
They come in two types:
- buffer objects
- image objects
*/
/*
*/
#if 0
int mallocBufferObject(cl_context context,
cl_mem_flags flags,
size_t size,
cl_mem* mem);
#endif
// Modified to support explicit host point
int mallocBufferObject(cl_context context,
cl_mem_flags flags,
size_t size,
void* host_pointer,
cl_mem* mem);
/*
*/
int getBufferObjectInfo(cl_mem object);
/*
*/
int memcopyBufferObjectToDevice(cl_command_queue cmd_queue,
cl_mem dest,
void* src,
size_t size);
/*
*/
int memcopyBufferObjectFromDevice(cl_command_queue cmd_queue,
void* dest,
cl_mem src,
size_t size);
/*
*/
int memcopyBufferObjectToBufferObject(cl_command_queue cmd_queue,
cl_mem dest,
cl_mem src,
size_t size);
/*
*/
void* memMap(cl_command_queue cmd_queue,
cl_mem dev_mem,
cl_map_flags flags,
size_t size);
/*
*/
int unmemMap(cl_command_queue cmd_queue,
cl_mem dev_mem,
void* host_ptr);
#endif /* BUFFER_OBJECTS_H */
ofdock_taskpar_xl/wrapcl/inc/CommandQueues.h deleted 100644 → 0
View file @ c15a9736
#ifndef COMMAND_QUEUES_H
#define COMMAND_QUEUES_H
// L30nardoSV
//#include <stdio.h>
//#include <CL/opencl.h>
#include "commonMacros.h"
/*
Create command queue
Inputs:
context -
device_id -
Outputs:
command_queue -
*/
int createCommandQueue(cl_context context,
cl_device_id device_id,
cl_command_queue* command_queue);
/*
Get devices of the first platform
Inputs:
cmd_queue -
Outputs:
none
*/
int getCommandQueueInfo(cl_command_queue cmd_queue);
// Include code for setCommandQueueProperties()?
#endif /* COMMAND_QUEUES_H */
ofdock_taskpar_xl/wrapcl/inc/Contexts.h deleted 100644 → 0
View file @ c15a9736
#ifndef CONTEXTS_H
#define CONTEXTS_H
// L30nardoSV
//#include <stdio.h>
//#include <CL/opencl.h>
#include "commonMacros.h"
/*
Create context
Inputs:
platform_id -
num_devices -
device_id -
Outputs:
context -
*/
int createContext(
/*
const cl_context_properties* properties,
*/
cl_platform_id platform_id,
cl_uint num_devices,
cl_device_id* device_id,
/*
void (*pfn_notify)(const char* errinfo,
const void* private_info,
size_t cb,
void* user_data)
void* user_data,
*/
/*
cl_int* errcode_ret,
*/
cl_context* context);
/*
Get context info
Inputs:
context -
Outputs:
none
*/
int getContextInfo(cl_context context);
#endif /* CONTEXTS_H */
ofdock_taskpar_xl/wrapcl/inc/Devices.h deleted 100644 → 0
View file @ c15a9736
#ifndef DEVICES_H
#define DEVICES_H
// L30nardoSV
//#include <stdio.h>
//#include <CL/opencl.h>
#include "commonMacros.h"
/*
Get devices of the first platform
Inputs:
platform_id -
plaformCount -
Outputs:
device_id -
deviceCount -
*/
int getDevices(cl_platform_id platform_id,
cl_uint platformCount,
cl_device_id** device_id,
cl_uint* deviceCount);
/*
Get devices' attributes
Inputs:
device_id -
deviceCount -
Outputs:
none
*/
int getDeviceAttributes(cl_device_id* device_id,
cl_uint deviceCount);
#endif /* DEVICES_H */
ofdock_taskpar_xl/wrapcl/inc/ImportBinary.h deleted 100644 → 0
View file @ c15a9736
#ifndef IMPORT_BINARY_H
#define IMPORT_BINARY_H
// L30nardoSV
//#include <stdio.h>
//#include <stdlib.h>
#include "commonMacros.h"
#include "Programs.h"
#include "Kernels.h"
/*
*/
int load_file_to_memory(const char* filename,
char** result);
/*
*/
int ImportBinary(const char* kernel_xclbin,
const char* kernel_name,
cl_device_id* device_id,
cl_context context,
/*cl_program* program,*/
const char* options,
cl_kernel* kernel);
#endif /* IMPORT_BINARY_H */
ofdock_taskpar_xl/wrapcl/inc/ImportSource.h deleted 100644 → 0
View file @ c15a9736
#ifndef IMPORT_SOURCE_H
#define IMPORT_SOURCE_H
// L30nardoSV
//#include <stdio.h>
#include <iostream>
#include <string.h>
#include <fstream>
//#include <stdlib.h>
#include "commonMacros.h"
#include "Programs.h"
#include "Kernels.h"
using namespace std;
/*
*/
int convertToString2(const char *filename, std::string& s);
/*
*/
int ImportSource(const char* filename,
const char* kernel_name,
cl_device_id* device_id,
cl_context context,
/*cl_program* program,*/
const char* options,
cl_kernel* kernel);
#endif /* IMPORT_SOURCE_H */
ofdock_taskpar_xl/wrapcl/inc/Kernels.h deleted 100644 → 0
View file @ c15a9736
#ifndef KERNELS_H
#define KERNELS_H
// L30nardoSV
//#include <stdio.h>
//#include <CL/opencl.h>
#include "commonMacros.h"
/*
*/
int getKernelInfo(cl_kernel kernel);
/*
*/
int getKernelWorkGroupInfo(cl_kernel kernel,
cl_device_id device);
/*
*/
int setKernelArg(cl_kernel kernel,
cl_uint num,
size_t size,
const void* ptr);
/*
*/
int runKernelTask(cl_command_queue cmd_queue,
cl_kernel kernel,
cl_ulong* time_start,
cl_ulong* time_stop);
/*
*/
int runKernel1D(cl_command_queue cmd_queue,
cl_kernel kernel,
size_t gxDimSize,
size_t lxDimSize,
cl_ulong* time_start,
cl_ulong* time_stop);
int runKernel2D(cl_command_queue cmd_queue,
cl_kernel kernel,
size_t gxDimSize,
size_t gyDimSize,
size_t lxDimSize,
size_t lyDimSize,
cl_ulong* time_start,
cl_ulong* time_stop);
int runKernel3D(cl_command_queue cmd_queue,
cl_kernel kernel,
size_t gxDimSize,
size_t gyDimSize,
size_t gzDimSize,
size_t lxDimSize,
size_t lyDimSize,
size_t lzDimSize,
cl_ulong* time_start,
cl_ulong* time_stop);
#endif /* KERNELS_H */
ofdock_taskpar_xl/wrapcl/inc/Platforms.h deleted 100644 → 0
View file @ c15a9736
#ifndef PLATFORMS_H
#define PLATFORMS_H
// L30nardoSV
//#include <stdio.h>
//#include <CL/opencl.h>
#include "commonMacros.h"
/* Get all available platforms
Inputs:
none
Outputs:
platform_id -
platformCount -
*/
int getPlatforms(cl_platform_id** platforms_id,
cl_uint* platformCount);
/* Get all platforms' attributes
Inputs:
none
Outputs:
platform_id -
platformCount -
*/
int getPlatformAttributes(cl_platform_id* platform_id,
cl_uint platformCount);
#endif /* PLATFORMS_H */
ofdock_taskpar_xl/wrapcl/inc/Programs.h deleted 100644 → 0
View file @ c15a9736
#ifndef PROGRAMS_H
#define PROGRAMS_H
// L30nardoSV
//#include <stdio.h>
//#include <CL/opencl.h>
#include "commonMacros.h"
/*
*/
int getProgramInfo(cl_program program);
/*
*/
int getprogramBuildInfo(cl_program program,
cl_device_id device);
#endif /* PROGRAMS_H */
ofdock_taskpar_xl/wrapcl/inc/commonMacros.h deleted 100644 → 0
View file @ c15a9736
#ifndef COMMON_MACROS_H
#define COMMON_MACROS_H
// L30nardoSV
//#include <malloc.h>
#include <stdio.h>
#include <stdlib.h>
#include <CL/opencl.h>
//#define EXIT_FAILURE -1
// ===============================================
// Platforms -> opencl_lvs/Platforms.cpp
// ===============================================
// #define PLATFORM_ATTRIBUTES_DISPLAY
// ===============================================
// Devices -> opencl_lvs/Devices.cpp
// ===============================================
// #define DEVICE_ATTRIBUTES_DISPLAY
// ===============================================
// Contexts -> opencl_lvs/Contexts.cpp
// ===============================================
// #define CONTEXT_INFO_DISPLAY
// ===============================================
// Commands -> opencl_lvs/CommandQueue.cpp
// ===============================================
// #define CMD_QUEUE_INFO_DISPLAY
// #define CMD_QUEUE_PROFILING_ENABLE
// #define CMD_QUEUE_OUTORDER_ENABLE
// ===============================================
// Programs -> opencl_lvs/Programs.cpp
// ===============================================
// #define PROGRAM_INFO_DISPLAY
// #define PROGRAM_BUILD_INFO_DISPLAY
// ===============================================
// Kernels -> opencl_lvs/Kernels.cpp
// ===============================================
// #define KERNEL_INFO_DISPLAY
// #define KERNEL_WORK_GROUP_INFO_DISPLAY
// ===============================================
// Buffer Objects -> opencl_lvs/BufferObjects.cpp
// ===============================================
// #define BUFFER_OBJECT_INFO_DISPLAY
#endif
ofdock_taskpar_xl/wrapcl/inc/listAttributes.h deleted 100644 → 0
View file @ c15a9736
#ifndef LIST_ATTRIBUTES_H
#define LIST_ATTRIBUTES_H
// L30nardoSV
//#include <CL/opencl.h>
#include "commonMacros.h"
// Platforms
extern const char* attributePlatNames[5];
extern const cl_platform_info attributePlatTypes[5];
extern const unsigned int attributePlatCount;
// Devices
extern const char* attributeDevNames[6];
extern const cl_device_info attributeDevTypes[6];
extern const unsigned int attributeDevCount;
extern const char* attributeUIntDevNames[18];
extern const cl_device_info attributeUIntDevTypes[18];
extern const unsigned int attributeUIntDevCount;
extern const char* attributeULongDevNames[5];
extern const cl_device_info attributeULongDevTypes[5];
extern const int unsigned attributeULongDevCount;
extern const char* attributeSizeTDevNames[8];
extern const cl_device_info attributeSizeTDevTypes[8];
extern const unsigned int attributeSizeTDevCount;
extern const char* attributeBoolDevNames[5];
extern const cl_device_info attributeBoolDevTypes[5];
extern const unsigned int attributeBoolDevCount;
#endif /* LIST_ATTRIBUTES_H */
ofdock_taskpar_xl/wrapcl/src/BufferObjects.cpp deleted 100644 → 0
View file @ c15a9736
#include "BufferObjects.h"
#if 0
int mallocBufferObject(cl_context context,
cl_mem_flags flags,
size_t size,
cl_mem* mem){
cl_mem local_mem;
local_mem = clCreateBuffer(context, flags, size, NULL, NULL);
if (!local_mem){
printf("Error: clCreateBuffer()\n");
fflush(stdout);
return EXIT_FAILURE;
}
#ifdef BUFFER_OBJECT_INFO_DISPLAY
cl_int err;
err = getBufferObjectInfo(local_mem);
if (err != CL_SUCCESS){
printf("Error: getBufferObjectInfo() %d\n",err);
fflush(stdout);
return EXIT_FAILURE;
}
#endif
*mem = local_mem;
return CL_SUCCESS;
}
#endif
int mallocBufferObject(cl_context context,
cl_mem_flags flags,
size_t size,
void* host_pointer,
cl_mem* mem){
cl_mem local_mem;
local_mem = clCreateBuffer(context, flags, size, host_pointer, NULL);
if (!local_mem){
printf("Error: clCreateBuffer()\n");
fflush(stdout);
return EXIT_FAILURE;
}
#ifdef BUFFER_OBJECT_INFO_DISPLAY
cl_int err;
err = getBufferObjectInfo(local_mem);
if (err != CL_SUCCESS){
printf("Error: getBufferObjectInfo() %d\n",err);
fflush(stdout);
return EXIT_FAILURE;
}
#endif
*mem = local_mem;
return CL_SUCCESS;
}
#ifdef BUFFER_OBJECT_INFO_DISPLAY
int getBufferObjectInfo(cl_mem object){
cl_int err;
cl_mem_object_type* mem_object_type;
cl_mem_flags* mem_flags;
void** mem_host_ptr; // host ptr that references the memory object's data
size_t* mem_size;
cl_context* mem_context;
/*
cl_mem* mem_assoc_memobject; // only valid for subbuffer objects
size_t* mem_offset; // only valid for subbuffer objects
*/
cl_uint* mem_ref_count;
size_t sizeParam;
// ----------------------------------------------------------------------------
// Query Mem object types
printf("\n-----------------------------------------------------------------------\n");
err = clGetMemObjectInfo(object,CL_MEM_TYPE,0,NULL,&sizeParam);
if (err != CL_SUCCESS){
printf("Error: clGetMemObjectInfo() %d\n",err);
fflush(stdout);
return EXIT_FAILURE;
}
mem_object_type = (cl_mem_object_type*) malloc(sizeof(cl_mem_object_type) * sizeParam);
err = clGetMemObjectInfo(object,CL_MEM_TYPE,sizeParam,mem_object_type,NULL);
if (err != CL_SUCCESS){
printf("Error: clGetMemObjectInfo() %d\n",err);
fflush(stdout);
return EXIT_FAILURE;
}</