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Commit 8686b14a authored by Leonardo Solis's avatar Leonardo Solis
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solved some deadlocks 


Former-commit-id: 2ded3b42
parent cb34a294
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common_xilinx/utility/boards.mk
View file @ 8686b14a
......@@ -7,6 +7,402 @@ PROFILE ?= no
# Default C++ Compiler Flags and xocc compiler flags
CXXFLAGS:=-Wall -O0 -g -std=c++14
# =============================
# Enable Kernels
# =============================
ENABLE_K1 = YES
ENABLE_K2 = YES
ENABLE_K3 = YES
ENABLE_K4 = YES
# Prng kernels
# bt prng float
ENABLE_K5 = NO
ENABLE_K6 = YES
ENABLE_K7 = YES
# bt prng ushort (check kernel36)
ENABLE_K8 = NO
# ls1 prng
ENABLE_K9 = NO
ENABLE_K10 = YES
# Replace single Krnl_Prng_Arbiter
# See kernels 31, 32, 33, 34
ENABLE_K11 = NO
# LS kernels
ENABLE_K12 = YES
# disable Krnl_LS_Arbiter
ENABLE_K13 = NO
ENABLE_K14 = YES
ENABLE_K15 = YES
# disable Krnl_LS2_Arbiter
ENABLE_K16 = NO
#ENABLE_K17 = YES
#ENABLE_K18 = YES
#ENABLE_K19 = YES
ENABLE_K20 = YES
ENABLE_K21 = YES
# disable Krnl_LS3_Arbiter
ENABLE_K22 = NO
#ENABLE_K23 = YES
#ENABLE_K24 = YES
# PRNGS in GA for LS2 and LS3
# ls2 & ls3 prng (ls1 is K9)
# replacement is K35
ENABLE_K25 = NO
ENABLE_K26 = NO
ENABLE_K27 = YES
# IA Pipeline
ENABLE_K28 = NO
ENABLE_K29 = NO
ENABLE_K30 = NO
# BT, GG, LS_ushort, LS_float arbiters
ENABLE_K31 = NO
ENABLE_K32 = NO
ENABLE_K33 = NO
ENABLE_K34 = NO
# ls123 prng
ENABLE_K35 = YES
# bt ushort_float
ENABLE_K36 = YES
# prng ls4, ls5
ENABLE_K37 = YES
ENABLE_K38 = YES
# krnl_ls4, Krnl_ls5
ENABLE_K39 = YES
ENABLE_K40 = YES
# prng ls6, ls7, ls8, ls9
ENABLE_K41 = YES
ENABLE_K42 = YES
ENABLE_K43 = YES
ENABLE_K44 = YES
# krnl_ls6, Krnl_ls7, krnl_ls8, Krnl_ls9
ENABLE_K45 = YES
ENABLE_K46 = YES
ENABLE_K47 = YES
ENABLE_K48 = YES
ifeq ($(ENABLE_K1),YES)
K1 =-DENABLE_KERNEL1
else
K1 =
endif
ifeq ($(ENABLE_K2),YES)
K2 =-DENABLE_KERNEL2
else
K2 =
endif
ifeq ($(ENABLE_K3),YES)
K3 =-DENABLE_KERNEL3
else
K3 =
endif
ifeq ($(ENABLE_K4),YES)
K4 =-DENABLE_KERNEL4
else
K4 =
endif
ifeq ($(ENABLE_K5),YES)
K5 =-DENABLE_KERNEL5
else
K5 =
endif
ifeq ($(ENABLE_K6),YES)
K6 =-DENABLE_KERNEL6
else
K6 =
endif
ifeq ($(ENABLE_K7),YES)
K7 =-DENABLE_KERNEL7
else
K7 =
endif
ifeq ($(ENABLE_K8),YES)
K8 =-DENABLE_KERNEL8
else
K8 =
endif
ifeq ($(ENABLE_K9),YES)
K9 =-DENABLE_KERNEL9
else
K9 =
endif
ifeq ($(ENABLE_K10),YES)
K10 =-DENABLE_KERNEL10
else
K10 =
endif
ifeq ($(ENABLE_K11),YES)
K11 =-DENABLE_KERNEL11
else
K11 =
endif
ifeq ($(ENABLE_K12),YES)
K12 =-DENABLE_KERNEL12
else
K12 =
endif
ifeq ($(ENABLE_K13),YES)
K13 =-DENABLE_KERNEL13
else
K13 =
endif
ifeq ($(ENABLE_K14),YES)
K14 =-DENABLE_KERNEL14
else
K14 =
endif
ifeq ($(ENABLE_K15),YES)
K15 =-DENABLE_KERNEL15
else
K15 =
endif
ifeq ($(ENABLE_K16),YES)
K16 =-DENABLE_KERNEL16
else
K16 =
endif
ifeq ($(ENABLE_K17),YES)
K17 =-DENABLE_KERNEL17
else
K17 =
endif
ifeq ($(ENABLE_K18),YES)
K18 =-DENABLE_KERNEL18
else
K18 =
endif
ifeq ($(ENABLE_K19),YES)
K19 =-DENABLE_KERNEL19
else
K19 =
endif
ifeq ($(ENABLE_K20),YES)
K20 =-DENABLE_KERNEL20
else
K20 =
endif
ifeq ($(ENABLE_K21),YES)
K21 =-DENABLE_KERNEL21
else
K21 =
endif
ifeq ($(ENABLE_K22),YES)
K22 =-DENABLE_KERNEL22
else
K22 =
endif
ifeq ($(ENABLE_K23),YES)
K23 =-DENABLE_KERNEL23
else
K23 =
endif
ifeq ($(ENABLE_K24),YES)
K24 =-DENABLE_KERNEL24
else
K24 =
endif
ifeq ($(ENABLE_K25),YES)
K25 =-DENABLE_KERNEL25
else
K25 =
endif
ifeq ($(ENABLE_K26),YES)
K26 =-DENABLE_KERNEL26
else
K26 =
endif
ifeq ($(ENABLE_K27),YES)
K27 =-DENABLE_KERNEL27
else
K27 =
endif
ifeq ($(ENABLE_K28),YES)
K28 =-DENABLE_KERNEL28
else
K28 =
endif
ifeq ($(ENABLE_K29),YES)
K29 =-DENABLE_KERNEL29
else
K29 =
endif
ifeq ($(ENABLE_K30),YES)
K30 =-DENABLE_KERNEL30
else
K30 =
endif
ifeq ($(ENABLE_K31),YES)
K31 =-DENABLE_KERNEL31
else
K31 =
endif
ifeq ($(ENABLE_K32),YES)
K32 =-DENABLE_KERNEL32
else
K32 =
endif
ifeq ($(ENABLE_K33),YES)
K33 =-DENABLE_KERNEL33
else
K33 =
endif
ifeq ($(ENABLE_K34),YES)
K34 =-DENABLE_KERNEL34
else
K34 =
endif
ifeq ($(ENABLE_K35),YES)
K35 =-DENABLE_KERNEL35
else
K35 =
endif
ifeq ($(ENABLE_K36),YES)
K36 =-DENABLE_KERNEL36
else
K36 =
endif
ifeq ($(ENABLE_K37),YES)
K37 =-DENABLE_KERNEL37
else
K37 =
endif
ifeq ($(ENABLE_K38),YES)
K38 =-DENABLE_KERNEL38
else
K38 =
endif
ifeq ($(ENABLE_K39),YES)
K39 =-DENABLE_KERNEL39
else
K39 =
endif
ifeq ($(ENABLE_K40),YES)
K40 =-DENABLE_KERNEL40
else
K40 =
endif
ifeq ($(ENABLE_K41),YES)
K41 =-DENABLE_KERNEL41
else
K41 =
endif
ifeq ($(ENABLE_K42),YES)
K42 =-DENABLE_KERNEL42
else
K42 =
endif
ifeq ($(ENABLE_K43),YES)
K43 =-DENABLE_KERNEL43
else
K43 =
endif
ifeq ($(ENABLE_K44),YES)
K44 =-DENABLE_KERNEL44
else
K44 =
endif
ifeq ($(ENABLE_K45),YES)
K45 =-DENABLE_KERNEL45
else
K45 =
endif
ifeq ($(ENABLE_K46),YES)
K46 =-DENABLE_KERNEL46
else
K46 =
endif
ifeq ($(ENABLE_K47),YES)
K47 =-DENABLE_KERNEL47
else
K47 =
endif
ifeq ($(ENABLE_K48),YES)
K48 =-DENABLE_KERNEL48
else
K48 =
endif
# =============================
# Reproduce result (remove randomness)
# =============================
......@@ -162,7 +558,8 @@ FIPO_FLAG = $(FIPOCO_FLAG) \
#CLFLAGS:= --xp "param:compiler.preserveHlsOutput=1" --xp "param:compiler.generateExtraRunData=true" -s
#CLFLAGS:= --xp "param:compiler.version=31" --xp "param:compiler.preserveHlsOutput=1" --xp "param:compiler.generateExtraRunData=true" -s
#CLFLAGS:= --xp "param:compiler.version=31" --xp "param:compiler.preserveHlsOutput=1" --xp "param:compiler.generateExtraRunData=true" -s -I./ -I../ -I./device
CLFLAGS:= --xp "param:compiler.version=31" --xp "param:compiler.preserveHlsOutput=1" --xp "param:compiler.generateExtraRunData=true" -s -I./ -I../ -I./device $(REP) $(FIPO_FLAG)
#CLFLAGS:= --xp "param:compiler.version=31" --xp "param:compiler.preserveHlsOutput=1" --xp "param:compiler.generateExtraRunData=true" -s -I./ -I../ -I./device $(REP) $(FIPO_FLAG)
CLFLAGS:= --xp "param:compiler.version=31" --xp "param:compiler.preserveHlsOutput=1" --xp "param:compiler.generateExtraRunData=true" -s -g -I./ -I../ -I./device $(REP) $(FIPO_FLAG)
ifneq ($(REPORT),none)
......
ofdock_taskpar_xl/Makefile
View file @ 8686b14a
......@@ -634,5 +634,7 @@ include $(COMMON_REPO)/utility/rules.mk
# Automate test
# "exe" and "xclbin" are rules from "rules.mk"
emu:
XCL_EMULATION_MODE=sw_emu ./hostbin -ffile input/1stp/derived/1stp_protein.maps.fld -lfile input/1stp/derived/1stp_ligand.pdbqt -nrun 1 -nev 100 -lsit 10
XCL_EMULATION_MODE=sw_emu ./hostbin -ffile input/1stp/derived/1stp_protein.maps.fld -lfile input/1stp/derived/1stp_ligand.pdbqt -nrun 1 -nev 100 -lsit 10 -psize 10
debug:
XCL_EMULATION_MODE=sw_emu xgdb -args ./hostbin -ffile input/1stp/derived/1stp_protein.maps.fld -lfile input/1stp/derived/1stp_ligand.pdbqt -nrun 1 -nev 100 -lsit 10 -psize 10
ofdock_taskpar_xl/device/Krnl_Conform.cl
View file @ 8686b14a
......@@ -169,9 +169,9 @@ while(active) {
#endif
}
#if defined (DEBUG_ACTIVE_KERNEL)
// #if defined (DEBUG_ACTIVE_KERNEL)
if (active == 0x00) {printf(" %-20s: %s\n", "Krnl_Conform", "must be disabled");}
#endif
// #endif
for (ushort rotation_counter = 0; rotation_counter < DockConst_rotbondlist_length; rotation_counter++)
{
......@@ -517,9 +517,9 @@ while(active) {
} // End of while(active)
#if defined (DEBUG_ACTIVE_KERNEL)
//#if defined (DEBUG_ACTIVE_KERNEL)
printf(" %-20s: %s\n", "Krnl_Conform", "disabled");
#endif
//#endif
}
// --------------------------------------------------------------------------
......
ofdock_taskpar_xl/device/Krnl_GA.cl
View file @ 8686b14a
......@@ -564,9 +564,9 @@ void Krnl_GA(
LocalEneCurr[pop_cnt] = energyIA_IC_rx + energyIE_IC_rx;
#if defined (DEBUG_KRNL_IC)
// #if defined (DEBUG_KRNL_IC)
printf(", IC - rx pop: %u\n", pop_cnt);
#endif
// #endif
}
// ------------------------------------------------------------------
......@@ -662,9 +662,9 @@ void Krnl_GA(
LocalEneNext[0] = loc_energies[best_entity];
}
#if defined (DEBUG_KRNL_GA)
// #if defined (DEBUG_KRNL_GA)
printf("Krnl_GA: %u\n", new_pop_cnt);
#endif
// #endif
float local_entity_1 [ACTUAL_GENOTYPE_LENGTH];
float local_entity_2 [ACTUAL_GENOTYPE_LENGTH];
......@@ -683,7 +683,7 @@ void Krnl_GA(
/*
mem_fence(CLK_CHANNEL_MEM_FENCE);
*/
//printf("test point 1\n");
// Convert: float prng that must be still converted to short
float bt_tmp_uf0 = bt_tmp.s0;
float bt_tmp_uf1 = bt_tmp.s2;
......@@ -741,6 +741,7 @@ void Krnl_GA(
/*
mem_fence(CLK_CHANNEL_MEM_FENCE);
*/
//printf("test point 2\n");
uchar covr_point_low;
uchar covr_point_high;
......@@ -765,6 +766,7 @@ void Krnl_GA(
/*
mem_fence(CLK_CHANNEL_MEM_FENCE);
*/
//printf("test point 3\n");
for (uchar gene_cnt=0; gene_cnt<DockConst_num_of_genes; gene_cnt++) {
/*
......@@ -775,6 +777,7 @@ void Krnl_GA(
/*
mem_fence(CLK_CHANNEL_MEM_FENCE);
*/
//printf("test point 4\n");
float tmp_offspring;
......@@ -811,11 +814,12 @@ void Krnl_GA(
write_channel_altera(chan_GG2Conf_genotype, tmp_offspring);
*/
write_pipe_block(chan_GG2Conf_genotype, &tmp_offspring);
//printf("test point 5\n");
}
#if defined (DEBUG_KRNL_GG)
// #if defined (DEBUG_KRNL_GG)
printf("GG - tx pop: %u", new_pop_cnt);
#endif
// #endif
// Read energy
float energyIA_GG_rx;
......@@ -849,13 +853,14 @@ void Krnl_GA(
*/
inter_valid = read_pipe(chan_Intere2StoreGG_intere, &energyIE_GG_rx);
}
//printf("intra_valid: %i, inter_valid: %i\n", intra_valid, inter_valid);
}
//printf("test point 5\n");
LocalEneNext[new_pop_cnt] = energyIA_GG_rx + energyIE_GG_rx;
#if defined (DEBUG_KRNL_GG)
// #if defined (DEBUG_KRNL_GG)
printf(", GG - rx pop: %u\n", new_pop_cnt);
#endif
// #endif
}
// ------------------------------------------------------------------
// LS: Local Search
......@@ -876,6 +881,7 @@ void Krnl_GA(
/*
mem_fence(CLK_CHANNEL_MEM_FENCE);
*/
printf("test point LS 1\n");
ushort entity_ls1 = entity_ls.s0;
ushort entity_ls2 = entity_ls.s1;
......
ofdock_taskpar_xl/device/Krnl_InterE.cl
View file @ 8686b14a
......@@ -501,6 +501,10 @@ while(active) {
case 0x09: write_pipe_block(chan_Intere2StoreLS_LS9_intere, &final_interE); break;
}
// --------------------------------------------------------------
#if defined (DEBUG_KRNL_INTERE)
printf("AFTER Out INTERE CHANNEL\n");
#endif
} // End of while(active)
......
ofdock_taskpar_xl/device/Krnl_IntraE.cl
View file @ 8686b14a
......@@ -243,6 +243,10 @@ while(active) {
}
// --------------------------------------------------------------
#if defined (DEBUG_KRNL_INTRAE)
printf("AFTER Out INTRAE CHANNEL\n");
#endif
} // End of while(active)
#if defined (DEBUG_ACTIVE_KERNEL)
......
ofdock_taskpar_xl/device/Krnl_PRNG.cl
View file @ 8686b14a
......@@ -21,7 +21,8 @@ void Krnl_Prng_BT_ushort_float(unsigned int Host_seed1,
/*
while(!valid) {
*/
while(valid == 0) {
while(valid != 0) {
bool active = true;
/*
active = read_channel_nb_altera(chan_Arbiter_BT_ushort_float_off, &valid);
......@@ -54,14 +55,16 @@ void Krnl_Prng_BT_ushort_float(unsigned int Host_seed1,
/*
if(!valid) {
*/
if(valid == 0) {
if(valid != 0) {
float8 tmp = {*(float*)&u_tmp[0], f_tmp[0],
*(float*)&u_tmp[1], f_tmp[1],
*(float*)&u_tmp[2], f_tmp[2],
*(float*)&u_tmp[3], f_tmp[3]};
/*
success = write_channel_nb_altera(chan_PRNG2GA_BT_ushort_float_prng, tmp);
*/
success = write_pipe(chan_PRNG2GA_BT_ushort_float_prng, &tmp);
}
} /*// End of while(!valid)*/
......@@ -86,7 +89,7 @@ void Krnl_Prng_GG_uchar(unsigned int Host_seed,
/*
while(!valid) {
*/
while(valid == 0) {
while(valid != 0) {
bool active = true;
/*
active = read_channel_nb_altera(chan_Arbiter_GG_uchar_off, &valid);
......@@ -116,7 +119,7 @@ void Krnl_Prng_GG_uchar(unsigned int Host_seed,
/*
if(!valid) {
*/
if(valid == 0) {
if(valid != 0) {
/*
success = write_channel_nb_altera(chan_PRNG2GA_GG_uchar_prng, utmp);
*/
......@@ -141,7 +144,7 @@ void Krnl_Prng_GG_float(unsigned int Host_seed,
/*
while(!valid) {
*/
while(valid == 0) {
while(valid != 0) {
bool active = true;
/*
......@@ -164,7 +167,7 @@ void Krnl_Prng_GG_float(unsigned int Host_seed,
/*
if(!valid) {
*/
if(valid == 0) {
if(valid != 0) {
/*
success = write_channel_nb_altera(chan_PRNG2GA_GG_float_prng, tmp);
*/
......@@ -211,7 +214,7 @@ void Krnl_Prng_LS123_ushort(unsigned int Host_seed1,
/*
while(!valid) {
*/
while(valid == 0) {
while(valid != 0) {
bool active = true;
/*
active = read_channel_nb_altera(chan_Arbiter_LS123_ushort_off, &valid);
......@@ -269,7 +272,7 @@ void Krnl_Prng_LS123_ushort(unsigned int Host_seed1,
/*
if(!valid) {