improved readability rules

ofdock_taskpar_alt/Makefile

@@ -320,6 +320,7 @@ $(TARGET_DIR)/$(TARGET) : Makefile $(SRCS) $(INCS) $(TARGET_DIR)
 # Following values are used only for emulation
 # to have a short but still a representative test
 PDB  := 1stp
+PSIZE:= 150
 NRUN := 5
 NEV  := 50000
 NGEN := 27000
@@ -363,7 +364,10 @@ keremu: $(DEV_SRC)
 # So .dlg file is written in $(TARGET_DIR)
 emu: $(TARGET_DIR)/$(TARGET) keremu
 	cd $(TARGET_DIR) && \
-	CL_CONTEXT_EMULATOR_DEVICE_ALTERA=1 ./$(TARGET) -ffile ../input/$(PDB)/derived/$(PDB)_protein.maps.fld -lfile ../input/$(PDB)/derived/$(PDB)_ligand.pdbqt -nrun $(NRUN) -nev $(NEV) -ngen $(NGEN) -gfpop $(GFPOP)
+	CL_CONTEXT_EMULATOR_DEVICE_ALTERA=1 ./$(TARGET) \
+	-ffile ../input/$(PDB)/derived/$(PDB)_protein.maps.fld \
+	-lfile ../input/$(PDB)/derived/$(PDB)_ligand.pdbqt \
+	-psize $(PSIZE) -nrun $(NRUN) -nev $(NEV) -ngen $(NGEN) -gfpop 1
 	@echo $(newline)
 	@echo "======================================================="
 	@echo "INFO: log file is under: \"$(TARGET_DIR)/docking.dlg\" "
@@ -437,7 +441,11 @@ hw-prof:
 exe: $(TARGET_DIR)/$(TARGET)
 	cp $(TARGET_DIR)/$(TARGET) $(TARGET_DIR_HW)/ && \
 	cd $(TARGET_DIR_HW) && \
-	./$(TARGET) -ffile ../input/$(PDB)/derived/$(PDB)_protein.maps.fld -lfile ../input/$(PDB)/derived/$(PDB)_ligand.pdbqt -resnam docking_$(PDB)_$(NRUN) -nrun $(NRUN) -nev $(NEV) -ngen $(NGEN) -gfpop $(GFPOP)
+	./$(TARGET) \
+	-ffile ../input/$(PDB)/derived/$(PDB)_protein.maps.fld \
+	-lfile ../input/$(PDB)/derived/$(PDB)_ligand.pdbqt \
+	-resnam docking_$(PDB)_$(NRUN) \
+	-nrun $(NRUN) -gfpop $(GFPOP)
 	@echo $(newline)
 	@echo "========================================================================="
 	@echo "INFO: log file is under: \"$(TARGET_DIR_HW)/docking_$(PDB)_$(NRUN).dlg\" "
@@ -453,7 +461,11 @@ exe: $(TARGET_DIR)/$(TARGET)
 exe-prof: $(TARGET_DIR)/$(TARGET)
 	cp $(TARGET_DIR)/$(TARGET) $(TARGET_DIR_HW_PROF)/ && \
 	cd $(TARGET_DIR_HW_PROF) && \
-	./$(TARGET) -ffile ../input/$(PDB)/derived/$(PDB)_protein.maps.fld -lfile ../input/$(PDB)/derived/$(PDB)_ligand.pdbqt -resnam docking_$(PDB)_$(NRUN) -nrun $(NRUN) -nev $(NEV) -ngen $(NGEN) -gfpop $(GFPOP)
+	./$(TARGET) \
+	-ffile ../input/$(PDB)/derived/$(PDB)_protein.maps.fld \
+	-lfile ../input/$(PDB)/derived/$(PDB)_ligand.pdbqt \
+	-resnam docking_$(PDB)_$(NRUN) \
+	-nrun $(NRUN) -gfpop $(GFPOP)
 	@echo $(newline)
 	@echo "=============================================================================="
 	@echo "INFO: log file is under: \"$(TARGET_DIR_HW_PROF)/docking_$(PDB)_$(NRUN).dlg\" "