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Commit ef9fec9e authored by Leonardo Solis's avatar Leonardo Solis
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single DDR bank config 


Former-commit-id: 43664917
parent 1d0fe7dc
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ofdock_taskpar_xl/Makefile
View file @ ef9fec9e
......@@ -143,10 +143,16 @@ Krnl_GA_SRCS=./device/Krnl_GA.cl
# --sp Krnl_IntraE_1.m_axi_gmem9:bank3 \
# --sp Krnl_IntraE_1.m_axi_gmem10:bank3
#Krnl_GA_LDCLFLAGS+=--sp Krnl_GA_1.m_axi_gmem:bank0 \
# --sp Krnl_Conform_1.m_axi_gmem:bank1 \
# --sp Krnl_InterE_1.m_axi_gmem:bank2 \
# --sp Krnl_IntraE_1.m_axi_gmem:bank3
Krnl_GA_LDCLFLAGS+=--sp Krnl_GA_1.m_axi_gmem:bank0 \
--sp Krnl_Conform_1.m_axi_gmem:bank1 \
--sp Krnl_InterE_1.m_axi_gmem:bank2 \
--sp Krnl_IntraE_1.m_axi_gmem:bank3
--sp Krnl_Conform_1.m_axi_gmem:bank0 \
--sp Krnl_InterE_1.m_axi_gmem:bank1 \
--sp Krnl_IntraE_1.m_axi_gmem:bank1
##
# https://www.xilinx.com/support/documentation/sw_manuals/xilinx2017_4/ug1281-sdaccel-debugging-guide.pdf
# Page 32
......
ofdock_taskpar_xl/host/src/performdocking.cpp
View file @ ef9fec9e
......@@ -602,53 +602,53 @@ filled with clock() */
#if defined (FIXED_POINT_INTERE)
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(fixedpt64), &d_bank2_ext, &mem_KerConstStatic_fixpt64_atom_charges_const);
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(fixedpt64), &d_bank1_ext/*&d_bank2_ext*/, &mem_KerConstStatic_fixpt64_atom_charges_const);
#endif
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(float), &d_bank2_ext, &mem_KerConstStatic_InterE_atom_charges_const); // InterE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(char), &d_bank2_ext, &mem_KerConstStatic_InterE_atom_types_const); // InterE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(float), &d_bank1_ext/*&d_bank2_ext*/, &mem_KerConstStatic_InterE_atom_charges_const); // InterE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(char), &d_bank1_ext/*&d_bank2_ext*/, &mem_KerConstStatic_InterE_atom_types_const); // InterE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(float), &d_bank3_ext, &mem_KerConstStatic_IntraE_atom_charges_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(char), &d_bank3_ext, &mem_KerConstStatic_IntraE_atom_types_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(float), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_IntraE_atom_charges_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(char), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_IntraE_atom_types_const); // IntraE
/*
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, 3*MAX_INTRAE_CONTRIBUTORS*sizeof(char), &d_bank3_ext, &mem_KerConstStatic_intraE_contributors_const); // IntraE
*/
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_INTRAE_CONTRIBUTORS*sizeof(cl_char3), &d_bank3_ext, &mem_KerConstStatic_intraE_contributors_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_INTRAE_CONTRIBUTORS*sizeof(cl_char3), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_intraE_contributors_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, ATYPE_NUM*sizeof(float), &d_bank3_ext, &mem_KerConstStatic_reqm_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, ATYPE_NUM*sizeof(float), &d_bank3_ext, &mem_KerConstStatic_reqm_hbond_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, ATYPE_NUM*sizeof(unsigned int), &d_bank3_ext, &mem_KerConstStatic_atom1_types_reqm_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, ATYPE_NUM*sizeof(unsigned int), &d_bank3_ext, &mem_KerConstStatic_atom2_types_reqm_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, ATYPE_NUM*sizeof(float), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_reqm_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, ATYPE_NUM*sizeof(float), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_reqm_hbond_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, ATYPE_NUM*sizeof(unsigned int), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_atom1_types_reqm_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, ATYPE_NUM*sizeof(unsigned int), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_atom2_types_reqm_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATYPES*MAX_NUM_OF_ATYPES*sizeof(float), &d_bank3_ext, &mem_KerConstStatic_VWpars_AC_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATYPES*MAX_NUM_OF_ATYPES*sizeof(float), &d_bank3_ext, &mem_KerConstStatic_VWpars_BD_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATYPES*sizeof(float), &d_bank3_ext, &mem_KerConstStatic_dspars_S_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATYPES*sizeof(float), &d_bank3_ext, &mem_KerConstStatic_dspars_V_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATYPES*MAX_NUM_OF_ATYPES*sizeof(float), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_VWpars_AC_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATYPES*MAX_NUM_OF_ATYPES*sizeof(float), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_VWpars_BD_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATYPES*sizeof(float), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_dspars_S_const); // IntraE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATYPES*sizeof(float), &d_bank1_ext/*&d_bank3_ext*/, &mem_KerConstStatic_dspars_V_const); // IntraE
#if defined (FIXED_POINT_CONFORM)
// fixed-point
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTATIONS*sizeof(fixedpt), &d_bank1_ext, &mem_KerConstStatic_rotlist_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(cl_int3), &d_bank1_ext, &mem_KerConstStatic_ref_coords_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTBONDS*sizeof(cl_int3), &d_bank1_ext, &mem_KerConstStatic_rotbonds_moving_vectors_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTBONDS*sizeof(cl_int3), &d_bank1_ext, &mem_KerConstStatic_rotbonds_unit_vectors_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_RUNS*sizeof(cl_int4), &d_bank1_ext, &mem_KerConstStatic_ref_orientation_quats_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTATIONS*sizeof(fixedpt), &d_bank0_ext/*&d_bank1_ext*/, &mem_KerConstStatic_rotlist_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(cl_int3), &d_bank0_ext/*&d_bank1_ext*/, &mem_KerConstStatic_ref_coords_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTBONDS*sizeof(cl_int3), &d_bank0_ext/*&d_bank1_ext*/, &mem_KerConstStatic_rotbonds_moving_vectors_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTBONDS*sizeof(cl_int3), &d_bank0_ext/*&d_bank1_ext*/, &mem_KerConstStatic_rotbonds_unit_vectors_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_RUNS*sizeof(cl_int4), &d_bank0_ext/*&d_bank1_ext*/, &mem_KerConstStatic_ref_orientation_quats_const); // Conform
#else
// floating-point (original)
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTATIONS*sizeof(int), &d_bank1_ext, &mem_KerConstStatic_rotlist_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(cl_float3), &d_bank1_ext, &mem_KerConstStatic_ref_coords_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTBONDS*sizeof(cl_float3), &d_bank1_ext, &mem_KerConstStatic_rotbonds_moving_vectors_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTBONDS*sizeof(cl_float3), &d_bank1_ext, &mem_KerConstStatic_rotbonds_unit_vectors_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_RUNS*sizeof(cl_float4), &d_bank1_ext, &mem_KerConstStatic_ref_orientation_quats_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTATIONS*sizeof(int), &d_bank0_ext/*&d_bank1_ext*/, &mem_KerConstStatic_rotlist_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ATOMS*sizeof(cl_float3), &d_bank0_ext/*&d_bank1_ext*/, &mem_KerConstStatic_ref_coords_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTBONDS*sizeof(cl_float3), &d_bank0_ext/*&d_bank1_ext*/, &mem_KerConstStatic_rotbonds_moving_vectors_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_ROTBONDS*sizeof(cl_float3), &d_bank0_ext/*&d_bank1_ext*/, &mem_KerConstStatic_rotbonds_unit_vectors_const); // Conform
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX, MAX_NUM_OF_RUNS*sizeof(cl_float4), &d_bank0_ext/*&d_bank1_ext*/, &mem_KerConstStatic_ref_orientation_quats_const); // Conform
#endif
//#if defined (FIXED_POINT_INTERE)
#if 0
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX,size_fixedpt64grids, &d_bank2_ext, &mem_dockpars_fgrids); // InterE
#else
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX,size_floatgrids, &d_bank2_ext, &mem_dockpars_fgrids); // InterE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX,size_floatgrids, &d_bank1_ext/*&d_bank2_ext*/, &mem_dockpars_fgrids); // InterE
#if defined(SEPARATE_FGRID_INTERE)
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX,size_floatgrids2, &d_bank2_ext, &mem_dockpars_fgrids2); // InterE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX,size_floatgrids3, &d_bank2_ext, &mem_dockpars_fgrids3); // InterE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX,size_floatgrids2, &d_bank1_ext/*&d_bank2_ext*/, &mem_dockpars_fgrids2); // InterE
mallocBufferObject(context,CL_MEM_READ_ONLY | CL_MEM_EXT_PTR_XILINX,size_floatgrids3, &d_bank1_ext/*&d_bank2_ext*/, &mem_dockpars_fgrids3); // InterE
#endif
#endif
......
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