Commits · 664633705ba04be330e97f7a7d71b1a3d8bb4ebb · docking / ocladock-fpga

15 Nov, 2018 5 commits
- #36, first commit (swemu OK) of tradition GA with sdx174 · 66463370
  Leonardo Solis authored Nov 15, 2018
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  66463370
- #25, added inline attribute to map_angle_<>() used in Krnl_GA · e9dc7a4c
  Leonardo Solis authored Nov 15, 2018
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  e9dc7a4c
- #25, added inline attribute to sqrt_custom(), used in IntraE · 06d8a357
  Leonardo Solis authored Nov 15, 2018
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  06d8a357
- #32, removed all refs (unnecesary) to gpu · 4015eba0
  Leonardo Solis authored Nov 15, 2018
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  4015eba0
- #34, xilinx174 - simplfied turnoff on LS kernels · baa87eb8
  Leonardo Solis authored Nov 15, 2018
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  baa87eb8
14 Nov, 2018 2 commits
- #24, assigned DDR using c++ Xilinx style · c9988b79
  Leonardo Solis authored Nov 14, 2018
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  c9988b79
- #8, replaced krnl Arbiter with an equivalent simplified design · e57e17bd
  Leonardo Solis authored Nov 14, 2018
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  e57e17bd
13 Nov, 2018 2 commits
- improved copy (to remote server) · f0dcd4b5
  Leonardo Solis authored Nov 13, 2018
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  f0dcd4b5
- modified assignment to DDR · 8a9b9b7c
  Leonardo Solis authored Nov 13, 2018
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Builds hw xclbin for aws + had to explicitly delete local file that configured debug_ip


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  8a9b9b7c
12 Nov, 2018 1 commit

Leonardo Solis authored Nov 12, 2018

still cannot build FPGA binary: DEBUG_IP_LAYOUT exceeded max size


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dc4d62bf

11 Nov, 2018 14 commits
- #30, corrected ligand branch read (ignored 2nd atom index in BRANCH keyword) · b66fe92e
  Leonardo Solis authored Nov 11, 2018
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  b66fe92e
- more updates on README sdx174 · 76c945d9
  Leonardo Solis authored Nov 11, 2018
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  76c945d9
- update README sdx174 · b5e78d49
  Leonardo Solis authored Nov 11, 2018
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  b5e78d49
- #31, corrected sizes of ligand arrays · 258560f0
  Leonardo Solis authored Nov 11, 2018
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MAX_NUM_OF_ATOMS increase (from 90 to 256) covers realistic scenarios but might impact on hw built


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  258560f0
- #31, removed several host compilation warnings · 09d4291a
  Leonardo Solis authored Nov 11, 2018
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  09d4291a
- #31, stop copying xclbin during hwemu · 57d3e6aa
  Leonardo Solis authored Nov 11, 2018
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  57d3e6aa
- #31, added clFinish() to ensure(correct) data-transfer to host after docking · 6a889bf7
  Leonardo Solis authored Nov 11, 2018
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now all #evals and #gens in final_population_runX.txt are correct


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  6a889bf7
- #31, removed useless already-commented krnl attrib max_global_work_dim · a1dc6d64
  Leonardo Solis authored Nov 11, 2018
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  a1dc6d64
- #31, removed wrong/misleading code/comments about time measurent · c557f94d
  Leonardo Solis authored Nov 11, 2018
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  c557f94d
- #31, cleaned and reordered #includes · d3c4caae
  Leonardo Solis authored Nov 11, 2018
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  d3c4caae
- #31, removed unused comments + #include headers · 9f955990
  Leonardo Solis authored Nov 11, 2018
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  9f955990
- #31, removed unused comments · a38f1000
  Leonardo Solis authored Nov 11, 2018
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  a38f1000
- #31, reordered index of cpu_prng_seeds within main loop · 701ce12d
  Leonardo Solis authored Nov 11, 2018
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  701ce12d
- #31, removed unused #defines · ed1aae0d
  Leonardo Solis authored Nov 11, 2018
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  ed1aae0d
10 Nov, 2018 16 commits
- #31, corrected code that was detected only when -DSW_EMU (hw build) · c7e5d1f3
  Leonardo Solis authored Nov 10, 2018
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  c7e5d1f3
- #31, krnl_GA: added write-only arg (final pops) + corrected initial-pop arg to read-only · b6e7e602
  Leonardo Solis authored Nov 10, 2018
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This one runs correctly in terms of docking, yay


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  b6e7e602
- #31, corrected property of energy cl_mem: for kernel is write-only · 86f2784f
  Leonardo Solis authored Nov 10, 2018
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  86f2784f
- #31, removed Makefile mesg about krnl binary copy · c8bb433a
  Leonardo Solis authored Nov 10, 2018
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swemu: because kernel binary is not copy anymore for

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  c8bb433a
- #31, corrected another setArg · b66a897f
  Leonardo Solis authored Nov 10, 2018
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swemu: compiles and runs but produces wrong results

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  b66a897f
- #31, corrected another setArg: size of Host_RunId · def58687
  Leonardo Solis authored Nov 10, 2018
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  def58687
- #31, corrected setArg problem: size of num_of_genes · bd83e711
  Leonardo Solis authored Nov 10, 2018
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  bd83e711
- #31, resolved alignment (=4096) of kernelconstant_static · cab561d5
  Leonardo Solis authored Nov 10, 2018
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  cab561d5
- #31, clean code based on SINGLE_COPY_POP_ENE=yes · 3ee08f63
  Leonardo Solis authored Nov 10, 2018
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  3ee08f63
- #31, removed unused SEPARATE_FGRID_INTERE code · e0f6511a
  Leonardo Solis authored Nov 10, 2018
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  e0f6511a
- #31, removed alternative fixed-point for simplicity · 778bdb3c
  Leonardo Solis authored Nov 10, 2018
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  778bdb3c
- #31 remove not needed NUM_OF_THREADS_PER_BLOCK · ef821c04
  Leonardo Solis authored Nov 10, 2018
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  ef821c04
- #31, relocated #define ATYPE_NUM into defines.h · 3f92f47e
  Leonardo Solis authored Nov 10, 2018
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  3f92f47e
- #31, removed not-anymore needed explicit includes to CL/opencl.h · 5b32bf68
  Leonardo Solis authored Nov 10, 2018
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this is already included within xcl2.hpp


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  5b32bf68
- #31, removed not anymore needed common folder (AOCLUtils) + their refs · 0f29771b
  Leonardo Solis authored Nov 10, 2018
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compiles but same errors as commit c15a9736


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  0f29771b
- #31, removing not anymore needed wrapcl folder + their refs · 03926704
  Leonardo Solis authored Nov 10, 2018
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compiles but same errors as commit c15a9736


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  03926704