Loading host/inc/processgrid.h +2 −2 Original line number Diff line number Diff line Loading @@ -32,7 +32,7 @@ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. #include <math.h> #ifndef _WIN32 // OCLADock #include <libgen.h> // libgen.h contains basename() and dir() from a fullpath name Loading @@ -54,7 +54,7 @@ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. typedef struct //Struct which can contain all the important informations which derives from .gpf and .xyz files. { // OCLADock #ifndef _WIN32 char* grid_file_path; // Added to store the full path of the grid file #else Loading host/src/performdocking.cpp +1 −1 Original line number Diff line number Diff line Loading @@ -1095,7 +1095,7 @@ filled with clock() */ printf("\n\n"); // =============================================================================== // OCLADock modification // Modification based on: // http://www.cc.gatech.edu/~vetter/keeneland/tutorial-2012-02-20/08-opencl.pdf // =============================================================================== Loading host/src/processligand.cpp +2 −5 Original line number Diff line number Diff line Loading @@ -1253,7 +1253,6 @@ void change_conform_f(Liganddata* myligand, refori_angle = cpu_ref_ori_angles[2]; // +++++++++++++++++++++++++++++++++++++++ // OCLADock //printf("cpu_ref_ori_angles [0]: %f, cpu_ref_ori_angles [1]: %f, %f\n",cpu_ref_ori_angles [0],cpu_ref_ori_angles [1],PI); //printf("refori_unitvec [0]:%f, refori_unitvec [1]:%f, refori_unitvec [2]:%f\n",refori_unitvec [0],refori_unitvec [1],refori_unitvec [2]); // +++++++++++++++++++++++++++++++++++++++ Loading Loading @@ -1367,7 +1366,6 @@ void change_conform_f(Liganddata* myligand, refori_shoemake [2] = (cpu_ref_ori_angles [2])*(2*PI); // +++++++++++++++++++++++++++++++++++++++ // OCLADock //printf("cpu_ref_ori_angles [0]: %f, cpu_ref_ori_angles [1]: %f, %f\n",cpu_ref_ori_angles [0],cpu_ref_ori_angles [1],PI); //printf("refori_unitvec [0]:%f, refori_unitvec [1]:%f, refori_unitvec [2]:%f\n",refori_unitvec [0],refori_unitvec [1],refori_unitvec [2]); // +++++++++++++++++++++++++++++++++++++++ Loading Loading @@ -1835,7 +1833,7 @@ void calc_interE_peratom_f(const Gridinfo* mygrid, //return interE; } // OCLADock original host "calc_intraE_f" function // Original host "calc_intraE_f" function #if 0 float calc_intraE_f(const Liganddata* myligand, float dcutoff, Loading Loading @@ -1960,8 +1958,7 @@ float calc_intraE_f(const Liganddata* myligand, } #endif // OCLADock host "calc_intraE_f" function // corrected after smoothing was added // Corrected host "calc_intraE_f" function after smoothing was added float calc_intraE_f(const Liganddata* myligand, float dcutoff, float smooth, Loading Loading
host/inc/processgrid.h +2 −2 Original line number Diff line number Diff line Loading @@ -32,7 +32,7 @@ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. #include <math.h> #ifndef _WIN32 // OCLADock #include <libgen.h> // libgen.h contains basename() and dir() from a fullpath name Loading @@ -54,7 +54,7 @@ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. typedef struct //Struct which can contain all the important informations which derives from .gpf and .xyz files. { // OCLADock #ifndef _WIN32 char* grid_file_path; // Added to store the full path of the grid file #else Loading
host/src/performdocking.cpp +1 −1 Original line number Diff line number Diff line Loading @@ -1095,7 +1095,7 @@ filled with clock() */ printf("\n\n"); // =============================================================================== // OCLADock modification // Modification based on: // http://www.cc.gatech.edu/~vetter/keeneland/tutorial-2012-02-20/08-opencl.pdf // =============================================================================== Loading
host/src/processligand.cpp +2 −5 Original line number Diff line number Diff line Loading @@ -1253,7 +1253,6 @@ void change_conform_f(Liganddata* myligand, refori_angle = cpu_ref_ori_angles[2]; // +++++++++++++++++++++++++++++++++++++++ // OCLADock //printf("cpu_ref_ori_angles [0]: %f, cpu_ref_ori_angles [1]: %f, %f\n",cpu_ref_ori_angles [0],cpu_ref_ori_angles [1],PI); //printf("refori_unitvec [0]:%f, refori_unitvec [1]:%f, refori_unitvec [2]:%f\n",refori_unitvec [0],refori_unitvec [1],refori_unitvec [2]); // +++++++++++++++++++++++++++++++++++++++ Loading Loading @@ -1367,7 +1366,6 @@ void change_conform_f(Liganddata* myligand, refori_shoemake [2] = (cpu_ref_ori_angles [2])*(2*PI); // +++++++++++++++++++++++++++++++++++++++ // OCLADock //printf("cpu_ref_ori_angles [0]: %f, cpu_ref_ori_angles [1]: %f, %f\n",cpu_ref_ori_angles [0],cpu_ref_ori_angles [1],PI); //printf("refori_unitvec [0]:%f, refori_unitvec [1]:%f, refori_unitvec [2]:%f\n",refori_unitvec [0],refori_unitvec [1],refori_unitvec [2]); // +++++++++++++++++++++++++++++++++++++++ Loading Loading @@ -1835,7 +1833,7 @@ void calc_interE_peratom_f(const Gridinfo* mygrid, //return interE; } // OCLADock original host "calc_intraE_f" function // Original host "calc_intraE_f" function #if 0 float calc_intraE_f(const Liganddata* myligand, float dcutoff, Loading Loading @@ -1960,8 +1958,7 @@ float calc_intraE_f(const Liganddata* myligand, } #endif // OCLADock host "calc_intraE_f" function // corrected after smoothing was added // Corrected host "calc_intraE_f" function after smoothing was added float calc_intraE_f(const Liganddata* myligand, float dcutoff, float smooth, Loading