Loading Makefile +31 −6 Original line number Diff line number Diff line Loading @@ -191,12 +191,25 @@ check-env-gpu: check-env-all: check-env-dev check-env-cpu check-env-gpu # ------------------------------------------------------ # Priting out its git version hash GIT_VERSION := $(shell git describe --abbrev=7 --dirty --always --tags) CFLAGS+=-DVERSION=\"$(GIT_VERSION)\" # ------------------------------------------------------ stringify: ./stringify_ocl_krnls.sh odock: check-env-all stringify $(SRC) g++ $(SRC) $(CFLAGS) -lOpenCL -o$(BIN_DIR)/$(TARGET) $(DEV) $(NWI) $(OPT) $(DD) $(REP) $(KFLAGS) g++ \ $(SRC) \ $(CFLAGS) \ -lOpenCL \ -o$(BIN_DIR)/$(TARGET) \ $(DEV) $(NWI) $(OPT) $(DD) $(REP) $(KFLAGS) # Example # 1ac8: for testing gradients of translation and rotation genes Loading @@ -209,9 +222,15 @@ POPSIZE := 150 TESTNAME := test TESTLS := sw test: odock $(BIN_DIR)/$(TARGET) -ffile ./input/$(PDB)/derived/$(PDB)_protein.maps.fld -lfile ./input/$(PDB)/derived/$(PDB)_ligand.pdbqt -nrun $(NRUN) -psize $(POPSIZE) -resnam $(TESTNAME) -gfpop 0 -lsmet $(TESTLS) $(BIN_DIR)/$(TARGET) \ -ffile ./input/$(PDB)/derived/$(PDB)_protein.maps.fld \ -lfile ./input/$(PDB)/derived/$(PDB)_ligand.pdbqt \ -nrun $(NRUN) \ -psize $(POPSIZE) \ -resnam $(TESTNAME) \ -gfpop 0 \ -lsmet $(TESTLS) ASTEX_PDB := 2bsm ASTEX_NRUN:= 10 Loading @@ -220,8 +239,14 @@ ASTEX_TESTNAME := test_astex ASTEX_LS := sw astex: odock $(BIN_DIR)/$(TARGET) -ffile ./input_tsri/search-set-astex/$(ASTEX_PDB)/protein.maps.fld -lfile ./input_tsri/search-set-astex/$(ASTEX_PDB)/flex-xray.pdbqt -nrun $(ASTEX_NRUN) -psize $(ASTEX_POPSIZE) -resnam $(ASTEX_TESTNAME) -gfpop 1 -lsmet $(ASTEX_LS) $(BIN_DIR)/$(TARGET) \ -ffile ./input_tsri/search-set-astex/$(ASTEX_PDB)/protein.maps.fld \ -lfile ./input_tsri/search-set-astex/$(ASTEX_PDB)/flex-xray.pdbqt \ -nrun $(ASTEX_NRUN) \ -psize $(ASTEX_POPSIZE) \ -resnam $(ASTEX_TESTNAME) \ -gfpop 1 \ -lsmet $(ASTEX_LS) # $(BIN_DIR)/$(TARGET) -ffile ./input_tsri/search-set-astex/$(ASTEX_PDB)/protein.maps.fld -lfile ./input_tsri/search-set-astex/$(ASTEX_PDB)/flex-xray.pdbqt -nrun $(ASTEX_NRUN) -psize $(ASTEX_POPSIZE) -resnam $(ASTEX_TESTNAME) -gfpop 1 | tee ./input_tsri/search-set-astex/intrapairs/$(ASTEX_PDB)_intrapair.txt Loading host/src/main.cpp +3 −0 Original line number Diff line number Diff line Loading @@ -111,6 +111,9 @@ int main(int argc, char* argv[]) //------------------------------------------------------------ // Starting Docking //------------------------------------------------------------ printf("\nOCLADock version: %s\n", VERSION); if (docking_with_gpu(&mygrid, floatgrids, &mypars, &myligand_init, &argc, argv, clock_start_program) != 0) return 1; Loading Loading
Makefile +31 −6 Original line number Diff line number Diff line Loading @@ -191,12 +191,25 @@ check-env-gpu: check-env-all: check-env-dev check-env-cpu check-env-gpu # ------------------------------------------------------ # Priting out its git version hash GIT_VERSION := $(shell git describe --abbrev=7 --dirty --always --tags) CFLAGS+=-DVERSION=\"$(GIT_VERSION)\" # ------------------------------------------------------ stringify: ./stringify_ocl_krnls.sh odock: check-env-all stringify $(SRC) g++ $(SRC) $(CFLAGS) -lOpenCL -o$(BIN_DIR)/$(TARGET) $(DEV) $(NWI) $(OPT) $(DD) $(REP) $(KFLAGS) g++ \ $(SRC) \ $(CFLAGS) \ -lOpenCL \ -o$(BIN_DIR)/$(TARGET) \ $(DEV) $(NWI) $(OPT) $(DD) $(REP) $(KFLAGS) # Example # 1ac8: for testing gradients of translation and rotation genes Loading @@ -209,9 +222,15 @@ POPSIZE := 150 TESTNAME := test TESTLS := sw test: odock $(BIN_DIR)/$(TARGET) -ffile ./input/$(PDB)/derived/$(PDB)_protein.maps.fld -lfile ./input/$(PDB)/derived/$(PDB)_ligand.pdbqt -nrun $(NRUN) -psize $(POPSIZE) -resnam $(TESTNAME) -gfpop 0 -lsmet $(TESTLS) $(BIN_DIR)/$(TARGET) \ -ffile ./input/$(PDB)/derived/$(PDB)_protein.maps.fld \ -lfile ./input/$(PDB)/derived/$(PDB)_ligand.pdbqt \ -nrun $(NRUN) \ -psize $(POPSIZE) \ -resnam $(TESTNAME) \ -gfpop 0 \ -lsmet $(TESTLS) ASTEX_PDB := 2bsm ASTEX_NRUN:= 10 Loading @@ -220,8 +239,14 @@ ASTEX_TESTNAME := test_astex ASTEX_LS := sw astex: odock $(BIN_DIR)/$(TARGET) -ffile ./input_tsri/search-set-astex/$(ASTEX_PDB)/protein.maps.fld -lfile ./input_tsri/search-set-astex/$(ASTEX_PDB)/flex-xray.pdbqt -nrun $(ASTEX_NRUN) -psize $(ASTEX_POPSIZE) -resnam $(ASTEX_TESTNAME) -gfpop 1 -lsmet $(ASTEX_LS) $(BIN_DIR)/$(TARGET) \ -ffile ./input_tsri/search-set-astex/$(ASTEX_PDB)/protein.maps.fld \ -lfile ./input_tsri/search-set-astex/$(ASTEX_PDB)/flex-xray.pdbqt \ -nrun $(ASTEX_NRUN) \ -psize $(ASTEX_POPSIZE) \ -resnam $(ASTEX_TESTNAME) \ -gfpop 1 \ -lsmet $(ASTEX_LS) # $(BIN_DIR)/$(TARGET) -ffile ./input_tsri/search-set-astex/$(ASTEX_PDB)/protein.maps.fld -lfile ./input_tsri/search-set-astex/$(ASTEX_PDB)/flex-xray.pdbqt -nrun $(ASTEX_NRUN) -psize $(ASTEX_POPSIZE) -resnam $(ASTEX_TESTNAME) -gfpop 1 | tee ./input_tsri/search-set-astex/intrapairs/$(ASTEX_PDB)_intrapair.txt Loading
host/src/main.cpp +3 −0 Original line number Diff line number Diff line Loading @@ -111,6 +111,9 @@ int main(int argc, char* argv[]) //------------------------------------------------------------ // Starting Docking //------------------------------------------------------------ printf("\nOCLADock version: %s\n", VERSION); if (docking_with_gpu(&mygrid, floatgrids, &mypars, &myligand_init, &argc, argv, clock_start_program) != 0) return 1; Loading